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datasources
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Removed the "Walker" suffix from all walkers that had it.
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2012-07-20 17:27:11 -04:00 |
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downsampling
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Make downsampler classes themselves generic (instead of just the Downsampler interface)
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2012-06-13 16:43:39 -04:00 |
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executive
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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filters
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Cleanup of VCF header lines and constants, BCF2 bugfixes
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2012-06-21 15:16:31 -04:00 |
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iterators
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Officially removing all code associated with extended events. Note that I still have a longer term project on my plate to refactor the ReadBackedPileup, but that's a much larger effort.
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2012-06-15 15:55:03 -04:00 |
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refdata
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RMDTrackBuilderUnitTest now uses private/testdata file to avoid filesystem race conditions
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2012-07-25 22:05:04 -04:00 |
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report
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Cleanup of VCF header lines and constants, BCF2 bugfixes
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2012-06-21 15:16:31 -04:00 |
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samples
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Cleanup of VCF header lines and constants, BCF2 bugfixes
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2012-06-21 15:16:31 -04:00 |
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traversals
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Removed the "Walker" suffix from all walkers that had it.
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2012-07-20 17:27:11 -04:00 |
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walkers
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Updating VQSR to work with the MNP and symbolic variants that are coming out of the HaplotypeCaller. Integration tests change because of the MNPs in dbSNP.
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2012-08-03 10:44:36 -04:00 |
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CommandLineGATKUnitTest.java
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Adding Unit Tests to cover the exception catching for Picard errors: because we are using String matching, we want to ensure that we know if/when the exception text changes underneath us.
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2012-07-18 21:48:58 -04:00 |
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EngineFeaturesIntegrationTest.java
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Sorting out HMS error handling (fingers crossed)
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2012-07-25 23:13:12 -04:00 |
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GenomeAnalysisEngineUnitTest.java
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Removed the "Walker" suffix from all walkers that had it.
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2012-07-20 17:27:11 -04:00 |
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WalkerManagerUnitTest.java
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Fixing walker unit test with the new naming convention
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2012-07-20 17:50:29 -04:00 |
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