Ryan Poplin 5f82ffd5d8 Adding LowQual filter to the output of the HaplotypeCaller.		2012-08-10 11:25:14 -04:00
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bqsr	Smoothing in the BQSR bins should be one error observation and one non-error observation.	2012-07-26 13:59:02 -04:00
compression/reducereads	Fixed divide by zero bug when downsampler goes over regions where reads are all filtered out. Added Guillermo's bug report as an integration test	2012-08-09 13:02:11 -04:00
genotyper	FisherStrand now uses RankSumTest isUsableBase to decide if a read should be included in testing	2012-07-18 16:07:47 -04:00
haplotypecaller	Adding LowQual filter to the output of the HaplotypeCaller.	2012-08-10 11:25:14 -04:00