David Roazen e7e76ed76e Replace org.broadinstitute.variant with jar built from the Picard repo ... The migration of org.broadinstitute.variant into the Picard repo is complete. This commit deletes the org.broadinstitute.variant sources from our repo and replaces it with a jar built from a checkout of the latest Picard-public svn revision.		2013-02-05 17:24:25 -05:00
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genotyper	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
pairhmm	Moving the random number generator over to using GenomeAnalysisEngine.getRandomGenerator in the logless versus exact pair hmm unit test. We don't believe this will fix the problem with the non-deterministic test failures but it will give us more information the next time it fails.	2013-02-05 12:56:20 -05:00
recalibration	Swap java Random generator for GATK one to ensure test determinism	2013-02-04 10:57:34 -05:00