gatk3的最后一个经典版本3.8

Mauricio Carneiro 5f1afb4136 Fixing an off-by-one clipping error in ReduceReads for reads off the contig ... Reads that are soft-clipped off the contig (before the beginning of the contig) were being soft-clipped to position 0 instead of 1 because of an off-by-one issue. Fixed and included in the integration test.		2012-12-13 22:10:11 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Fixing an off-by-one clipping error in ReduceReads for reads off the contig	2012-12-13 22:10:11 -05:00
public	Bringing in the changes from the CMI repo	2012-12-13 21:59:37 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Refactored entire NA12878KB to allow us to easily build a na12878kb.jar for IGV integration	2012-11-29 14:38:09 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00