Eric Banks 400e7c1404 Fixed bug in the filtering of lifted over variants where a deletion at the end of a contig could cause it to error out. ... Added a unit test.		2013-12-11 14:07:18 -05:00
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alignment	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
commandline	Merge pull request #380 from broadinstitute/gg_gatkdocs_arglabels	2013-08-16 15:34:56 -07:00
gatk	Fixed bug in the filtering of lifted over variants where a deletion at the end of a contig could cause it to error out.	2013-12-11 14:07:18 -05:00
jna	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
queue	fix a (ugly) weird error from last commit that changed all the scala files to end with MoleculoPipeline.scala	2013-11-18 11:44:24 -05:00
tools	New VCF engine arguments to specify an alternate IndexCreator	2013-12-03 13:31:02 -05:00
utils	Fix 3rd-party library dependency issues in the HC/PairHMM tests	2013-12-06 13:16:55 -05:00