Mauricio Carneiro 5ed47988b8 Changed the parameter names from cds to baits ... Making the usage more clear since the parameter is being used over and over to define baited regions. Updated the headers accordingly and made it more readable.		2013-10-24 17:15:56 -04:00
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java	Changed the parameter names from cds to baits	2013-10-24 17:15:56 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00