Mark DePristo 68eed7b313 Optimizations for VCF and BCF2 ... -- encodeTyped in BCF2Encoder now with specialized versions for int, float, and string, avoiding unnecessary intermediate list creation and dynamic type checking. encodeTypedMissing also includes inline operations now instead of using Collections.emptyList() version. Lots of contracts. User code updated to use specialized versions where possible -- Misc code refactoring -- Updated VCF float formating to always include 3 sig digits for values < 1, and 2 for > 1. Updating MD5s accordingly -- Expanded testing of BCF2Decoder to really use all of the encodeTyped* operations		2012-06-14 16:42:39 -04:00
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bcf2	Optimizations for VCF and BCF2	2012-06-14 16:42:39 -04:00
hapmap	Rev Tribble to r97, adding binary feature support	2012-05-03 07:31:48 -04:00
vcf	Updating MD5s to latest version to reflect inclusion of contigs in headers	2012-06-14 16:42:36 -04:00