Mark DePristo 5ec25797b3 Optimizations for BaseRecalibrator ... -- No longer computes at each update the overall read group table. Now computes this derived table only at the end of the computation, using the ByQual table as input. Reduces BQSR runtime by 1/3 in my test		2012-12-17 16:47:27 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Optimizations for BaseRecalibrator	2012-12-17 16:47:27 -05:00
test	Fix for PBT bug reported on the forum: the AD is actually output correctly now (rather than with 'null' or some gibberish memory pointer).	2012-12-13 23:28:30 +00:00