gatk3的最后一个经典版本3.8

Mark DePristo 5ec25797b3 Optimizations for BaseRecalibrator ... -- No longer computes at each update the overall read group table. Now computes this derived table only at the end of the computation, using the ByQual table as input. Reduces BQSR runtime by 1/3 in my test		2012-12-17 16:47:27 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Optimizations for BaseRecalibrator	2012-12-17 16:47:27 -05:00
public	Optimizations for BaseRecalibrator	2012-12-17 16:47:27 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Refactored entire NA12878KB to allow us to easily build a na12878kb.jar for IGV integration	2012-11-29 14:38:09 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00