..
datasources
Removed the "Walker" suffix from all walkers that had it.
2012-07-20 17:27:11 -04:00
downsampling
Make downsampler classes themselves generic (instead of just the Downsampler interface)
2012-06-13 16:43:39 -04:00
executive
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
filters
Cleanup of VCF header lines and constants, BCF2 bugfixes
2012-06-21 15:16:31 -04:00
iterators
Officially removing all code associated with extended events. Note that I still have a longer term project on my plate to refactor the ReadBackedPileup, but that's a much larger effort.
2012-06-15 15:55:03 -04:00
refdata
RMDTrackBuilderUnitTest now uses private/testdata file to avoid filesystem race conditions
2012-07-25 22:05:04 -04:00
report
Cleanup of VCF header lines and constants, BCF2 bugfixes
2012-06-21 15:16:31 -04:00
samples
Cleanup of VCF header lines and constants, BCF2 bugfixes
2012-06-21 15:16:31 -04:00
traversals
Removed the "Walker" suffix from all walkers that had it.
2012-07-20 17:27:11 -04:00
walkers
Integration test to ensure VariantFiltration makes . -> PASS/FAIL like VQSR
2012-07-25 08:56:39 -04:00
CommandLineGATKUnitTest.java
Adding Unit Tests to cover the exception catching for Picard errors: because we are using String matching, we want to ensure that we know if/when the exception text changes underneath us.
2012-07-18 21:48:58 -04:00
EngineFeaturesIntegrationTest.java
On the way to really sorting out HMS error handling
2012-07-25 22:11:10 -04:00
GenomeAnalysisEngineUnitTest.java
Removed the "Walker" suffix from all walkers that had it.
2012-07-20 17:27:11 -04:00
WalkerManagerUnitTest.java
Fixing walker unit test with the new naming convention
2012-07-20 17:50:29 -04:00
9242f63a4d