248 lines
302 KiB
Plaintext
248 lines
302 KiB
Plaintext
##fileformat=VCFv3.3
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##FILTER=FDRtranche12.50to25.00,"FDR tranche level at qual 1.8"
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##FILTER=FDRtranche25.00to35.00+,"FDR tranche level at qual > 4.8"
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##FILTER=FDRtranche5.00to12.50,"FDR tranche level at qual 4.8"
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##FILTER=HARD_TO_VALIDATE,"(MQ0 / (1.0 * DP)) > 0.1"
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##FILTER=InDel,"Overlaps a user-input mask"
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##FILTER=SnpCluster,"SNPs found in clusters"
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##FORMAT=DP,1,Integer,"Read Depth (only filtered reads used for calling)"
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##FORMAT=GL,3,Float,"Log-scaled likelihoods for AA,AB,BB genotypes where A=ref and B=alt; not applicable if site is not biallelic"
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##FORMAT=GQ,1,Float,"Genotype Quality"
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##FORMAT=GT,1,String,"Genotype"
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##INFO=AB,1,Float,"Allele Balance for hets (ref/(ref+alt))"
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##INFO=AC,1,Integer,"Allele count in genotypes, for each ALT allele, in the same order as listed"
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##INFO=AF,1,Float,"Allele Frequency"
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##INFO=AN,1,Integer,"Total number of alleles in called genotypes"
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##INFO=DB,1,Integer,"dbSNP Membership"
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##INFO=DP,1,Integer,"Total Depth"
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##INFO=Dels,1,Float,"Fraction of Reads Containing Spanning Deletions"
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##INFO=HRun,1,Integer,"Largest Contiguous Homopolymer Run of Variant Allele In Either Direction"
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##INFO=HaplotypeScore,1,Float,"Consistency of the site with two (and only two) segregating haplotypes"
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##INFO=MQ,1,Float,"RMS Mapping Quality"
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##INFO=MQ0,1,Integer,"Total Mapping Quality Zero Reads"
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##INFO=OQ,1,Float,"The original variant quality score"
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##INFO=QD,1,Float,"Variant Confidence/Quality by Depth"
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##INFO=SB,1,Float,"Strand Bias"
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##UG_assume_single_sample_reads=null
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##UG_bam_file_used=CEUTSI.chr20.cleaned.bam
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##UG_base_model=EMPIRICAL
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##UG_cap_base_quality_by_mapping_quality=false
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##UG_genotype=false
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##UG_genotype_model=JOINT_ESTIMATE
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##UG_heterozygosity=0.0010
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##UG_max_deletion_fraction=0.05
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##UG_max_mismatches_in_40bp_window=3
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##UG_min_base_quality_score=10
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##UG_min_mapping_quality_score=10
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##UG_noSLOD=false
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##UG_output_all_callable_bases=false
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##UG_platform=null
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##UG_standard_min_confidence_threshold_for_calling=10.0
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##UG_standard_min_confidence_threshold_for_emitting=30.0
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##UG_trigger_min_confidence_threshold_for_calling=30.0
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##UG_trigger_min_confidence_threshold_for_emitting=30.0
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##UG_use_reads_with_bad_mates=false
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##reference=human_g1k_v37.fasta
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##source=UnifiedGenotyper
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##source=VariantOptimizer
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#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA07056 NA11892 NA11893 NA12347 NA12348 NA12383 NA12413 NA12546 NA12775 NA12777 NA12778 NA20502 NA20505 NA20508 NA20509 NA20510 NA20512 NA20515 NA20516 NA20517 NA20518 NA20519 NA20520 NA20522 NA20524 NA20525 NA20527 NA20528 NA20529 NA20530 NA20531 NA20534 NA20535 NA20538 NA20539 NA20540 NA20541 NA20542 NA20543 NA20544 NA20582 NA20586 NA20588 NA20589 NA20752 NA20753 NA20754 NA20755 NA20756
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20 60251 . T C 6.78 0 AB=0.50;AC=1;AF=0.01;AN=98;DB=0;DP=181;Dels=0.00;HRun=0;HaplotypeScore=21.57;MQ=58.05;MQ0=0;OQ=15.98;QD=4.00;SB=-503.94 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-12.19:9.03 0/0:2:-0.01,-0.61,-6.42:6.00 0/0:2:-0.00,-0.60,-7.73:6.02 0/0:4:-0.00,-1.21,-15.02:12.04 0/0:5:-0.03,-1.53,-15.30:14.99 0/0:3:-0.00,-0.90,-11.28:9.03 0/0:3:-0.00,-0.91,-11.18:9.03 0/0:9:-0.03,-2.73,-31.82:27.03 0/1:4:-6.37,-1.21,-7.04:51.60 0/0:10:-0.03,-3.03,-32.50:30.05 0/0:3:-0.00,-0.90,-11.18:9.03 0/0:4:-0.00,-1.21,-13.85:12.03 0/0:1:-0.01,-0.31,-2.57:3.00 0/0:2:-0.00,-0.60,-8.02:6.02 0/0:4:-0.00,-1.21,-14.03:12.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.72:6.02 0/0:2:-0.00,-0.60,-7.72:6.02 0/0:2:-0.00,-0.60,-7.43:6.02 0/0:6:-0.01,-1.81,-21.03:18.05 0/0:4:-0.00,-1.21,-14.66:12.04 0/0:2:-0.00,-0.60,-7.53:6.02 0/0:4:-0.00,-1.21,-14.56:12.04 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.68:9.03 0/0:4:-0.02,-1.22,-12.96:12.00 0/0:6:-0.01,-1.82,-20.37:18.04 0/0:2:-0.00,-0.60,-6.41:6.01 0/0:8:-0.00,-2.41,-30.11:24.08 0/0:6:-0.00,-1.81,-21.77:18.05 0/0:2:-0.00,-0.60,-7.72:6.02 0/0:3:-0.00,-0.90,-11.89:9.03 0/0:4:-0.01,-1.21,-13.73:12.03 0/0:2:-0.00,-0.60,-7.92:6.02 0/0:6:-0.00,-1.81,-21.98:18.05 0/0:3:-0.00,-0.90,-11.38:9.03 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:2:-0.00,-0.60,-7.72:6.02 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:6:-0.01,-1.81,-21.17:18.05 0/0:5:-0.00,-1.51,-18.60:15.05 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:3:-0.00,-0.90,-11.29:9.03 0/0:3:-0.00,-0.90,-11.18:9.03 0/0:4:-0.00,-1.21,-14.82:12.04 0/0:7:-0.01,-2.11,-24.32:21.06 0/0:6:-0.00,-1.81,-21.47:18.05
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20 60321 . G T 1.42 FDRtranche25.00to35.00 AB=0.33;AC=1;AF=0.01;AN=98;DB=0;DP=187;Dels=0.00;HRun=2;HaplotypeScore=22.93;MQ=56.25;MQ0=0;OQ=15.86;QD=5.29;SB=-504.38 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:5:-0.00,-1.51,-16.32:15.03 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:8:-0.03,-2.43,-24.79:23.96 0/0:5:-0.03,-1.52,-12.92:14.92 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:5:-0.02,-1.52,-14.73:14.99 0/0:5:-0.01,-1.51,-13.57:14.97 0/0:3:-0.00,-0.90,-9.16:9.02 0/0:8:-0.03,-2.43,-23.90:23.98 0/0:3:-0.00,-0.90,-9.42:9.02 0/0:3:-0.00,-0.90,-9.10:9.02 0/0:1:-0.04,-0.31,-1.30:2.78 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:5:-0.00,-1.51,-16.29:15.04 0/1:3:-6.04,-0.91,-1.80:8.95 0/0:8:-0.00,-2.41,-26.37:24.06 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-5.81:6.01 0/0:3:-0.00,-0.90,-10.02:9.02 ./.:-1:0,0,0:-1 0/0:6:-0.01,-1.81,-18.59:18.04 0/0:6:-0.01,-1.81,-17.56:18.02 0/0:4:-0.01,-1.21,-11.97:12.02 0/0:4:-0.01,-1.21,-11.47:12.01 0/0:2:-0.00,-0.60,-6.21:6.01 0/0:7:-0.04,-2.12,-19.33:20.79 0/0:5:-0.01,-1.51,-14.57:14.97 ./.:-1:0,0,0:-1 0/0:4:-0.02,-1.21,-9.82:11.94 0/0:2:-0.01,-0.61,-4.56:5.96 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:3:-0.01,-0.91,-8.67:8.99 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:6:-0.01,-1.81,-17.83:18.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:3:-0.00,-0.90,-9.76:9.02 0/0:2:-0.00,-0.60,-5.36:6.00 0/0:6:-0.01,-1.81,-16.79:18.01 0/0:3:-0.03,-0.92,-7.07:8.92 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:1:-0.01,-0.31,-1.96:2.96 0/0:3:-0.00,-0.90,-9.72:9.02 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:4:-0.00,-1.21,-12.16:12.02 ./.:-1:0,0,0:-1 0/0:6:-0.01,-1.81,-18.53:18.02 0/0:8:-0.04,-2.42,-22.94:23.89
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20 60467 . G C 0.03 FDRtranche25.00to35.00+ AB=0.71;AC=3;AF=0.06;AN=98;DB=0;DP=162;Dels=0.01;HRun=1;HaplotypeScore=63.31;MQ=55.93;MQ0=0;OQ=46.69;QD=1.95;SB=-422.92 GT:DP:GL:GQ 0/0:2:-0.02,-0.62,-5.44:6.00 0/0:3:-0.02,-0.92,-11.03:9.00 0/0:3:-0.00,-0.90,-11.94:9.03 0/0:2:-0.00,-0.60,-8.78:6.02 0/0:2:-0.00,-0.60,-7.58:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.95:3.01 0/0:7:-0.02,-2.12,-25.16:21.06 0/1:4:-2.90,-1.22,-10.79:16.78 0/0:2:-0.00,-0.60,-7.44:6.02 0/0:3:-0.01,-0.91,-10.59:9.02 0/0:2:-0.00,-0.60,-8.68:6.02 0/0:1:-0.00,-0.30,-3.65:3.01 0/0:2:-0.00,-0.60,-7.99:6.02 0/0:6:-0.00,-1.81,-23.77:18.06 ./.:-1:0,0,0:-1 0/1:5:-4.03,-1.54,-12.93:24.91 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-6.54:6.02 0/0:7:-0.01,-1.81,-22.62:18.05 0/0:2:-0.00,-0.60,-7.74:6.02 0/0:6:-0.01,-1.81,-23.56:18.06 0/0:6:-0.03,-1.83,-22.36:18.03 0/0:2:-0.00,-0.60,-7.98:6.02 0/0:1:0.00,0.00,0.00:0.00 0/0:2:-0.00,-0.60,-8.48:6.02 0/0:4:-0.00,-1.21,-16.08:12.04 0/0:1:-0.00,-0.30,-3.89:3.01 0/0:2:-0.00,-0.60,-7.88:6.02 0/0:3:-0.00,-0.91,-10.94:9.03 0/0:1:-0.00,-0.30,-4.39:3.01 0/0:3:-0.00,-0.90,-12.88:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.69:3.01 0/1:5:-2.70,-1.52,-16.59:11.71 0/0:2:-0.00,-0.60,-7.59:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.05,-0.64,-5.49:5.97 0/0:3:-0.02,-0.92,-10.28:9.02 0/0:4:-0.03,-1.23,-13.88:12.01 0/0:1:-0.00,-0.30,-3.99:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.65:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.02,-0.32,-2.59:3.00 0/0:2:-0.02,-0.62,-5.94:6.00 0/0:5:-0.00,-1.51,-19.93:15.05 0/0:7:-0.02,-2.12,-26.16:21.05 0/0:4:-0.05,-1.25,-12.38:11.99
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20 60469 . A C 0.05 FDRtranche25.00to35.00+ AB=0.54;AC=11;AF=0.12;AN=98;DB=0;DP=171;Dels=0.00;HRun=1;HaplotypeScore=58.97;MQ=55.98;MQ0=0;OQ=46.69;QD=1.14;SB=-408.11 GT:DP:GL:GQ 0/1:2:-2.41,-0.61,-1.94:13.35 0/0:4:-0.05,-1.24,-11.07:11.87 0/0:3:-0.00,-0.90,-10.78:9.03 0/0:2:-0.04,-0.62,-4.58:5.81 0/1:4:-2.02,-1.22,-7.78:8.00 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.49:3.01 0/0:7:-1.80,-2.11,-19.81:3.09 0/0:5:-1.41,-1.52,-10.54:1.07 0/1:3:-2.10,-0.91,-6.34:11.96 0/0:3:-0.01,-0.91,-9.03:9.01 0/0:5:-0.00,-1.51,-16.36:15.04 1/1:1:-1.60,-0.31,-0.02:2.90 0/0:1:-0.00,-0.30,-3.59:3.01 0/0:5:-0.00,-1.51,-17.66:15.04 ./.:-1:0,0,0:-1 0/1:5:-1.60,-1.51,-13.34:0.90 0/0:1:-1.37,-1.59,-2.05:2.18 0/0:1:-0.00,-0.30,-3.39:3.01 0/0:6:-0.01,-1.81,-19.30:18.04 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:7:-0.02,-2.12,-19.50:21.01 0/1:6:-2.11,-1.81,-14.76:2.97 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:1:-0.05,-0.33,-1.49:2.86 0/1:3:-1.20,-0.92,-6.02:2.82 0/0:3:-0.00,-0.90,-10.33:9.03 0/0:1:-0.00,-0.30,-2.84:3.00 0/1:3:-1.30,-0.92,-6.51:3.85 0/0:3:-0.00,-0.90,-10.28:9.03 0/0:2:-0.00,-0.60,-6.43:6.02 0/0:2:-0.00,-0.60,-6.98:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.84:3.00 0/0:3:-0.00,-0.90,-9.02:9.01 0/0:1:-0.00,-0.30,-3.49:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.59:6.02 0/0:3:-0.03,-0.92,-7.02:8.84 0/0:3:-0.01,-0.91,-9.07:9.01 0/0:1:-0.00,-0.30,-3.24:3.01 ./.:-1:0,0,0:-1 0/1:2:-2.70,-0.60,-3.30:20.98 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.84:3.00 0/1:5:-1.73,-1.52,-10.98:2.05 0/0:5:-0.00,-1.51,-16.76:15.04 0/0:7:-0.01,-2.11,-22.10:21.04 0/0:6:-1.41,-1.82,-15.99:4.14
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20 60864 . G C 20.43 0 AB=0.60;AC=1;AF=0.01;AN=98;DB=0;DP=200;Dels=0.00;HRun=0;HaplotypeScore=29.58;MQ=57.91;MQ0=0;OQ=25.61;QD=5.12;SB=-529.44 GT:DP:GL:GQ 0/0:5:-0.00,-1.51,-21.02:15.05 0/0:5:-0.00,-1.51,-20.93:15.05 0/0:4:-0.00,-1.21,-16.78:12.04 0/0:3:-0.00,-0.90,-12.59:9.03 0/0:6:-0.00,-1.81,-23.82:18.06 0/0:3:-0.00,-0.90,-12.49:9.03 0/0:2:-0.00,-0.60,-8.38:6.02 0/0:7:-0.05,-2.15,-26.86:21.04 0/0:4:-0.00,-1.21,-15.43:12.04 0/0:10:-0.02,-3.03,-39.69:30.09 0/0:3:-0.00,-0.91,-11.93:9.03 0/0:1:-0.00,-0.30,-4.29:3.01 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-20.53:15.05 0/0:2:-0.00,-0.60,-8.24:6.02 0/0:1:-0.00,-0.30,-4.19:3.01 0/0:4:-0.00,-1.21,-16.63:12.04 0/0:5:-0.01,-1.51,-17.93:15.04 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:2:-0.00,-0.60,-7.94:6.02 0/0:5:-0.00,-1.51,-22.56:15.05 0/0:9:-0.01,-2.71,-35.06:27.09 0/0:8:-0.00,-2.41,-33.10:24.08 0/0:2:-0.00,-0.60,-7.94:6.02 0/0:2:-0.00,-0.60,-8.24:6.02 0/0:6:-0.01,-1.81,-22.97:18.06 0/0:3:-0.00,-0.90,-12.63:9.03 0/0:6:-0.03,-1.83,-20.97:18.03 0/1:5:-7.64,-1.51,-11.93:61.33 0/0:4:-0.00,-1.21,-17.12:12.04 0/0:7:-0.02,-2.13,-26.26:21.05 0/0:3:-0.00,-0.90,-11.79:9.03 0/0:3:-0.00,-0.91,-11.98:9.03 ./.:-1:0,0,0:-1 0/0:8:-0.00,-2.41,-33.55:24.08 0/0:3:-0.00,-0.90,-12.63:9.03 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:2:-0.00,-0.61,-6.79:6.02 0/0:5:-0.00,-1.51,-19.13:15.05 0/0:1:-0.00,-0.30,-3.55:3.01 0/0:1:-0.00,-0.30,-3.65:3.01 0/0:3:-0.01,-0.91,-11.19:9.03 0/0:5:-0.00,-1.51,-19.13:15.05 0/0:3:-0.00,-0.90,-12.83:9.03 0/0:2:-0.00,-0.60,-7.79:6.02 0/0:4:-0.00,-1.21,-15.58:12.04 0/0:4:-0.01,-1.21,-15.48:12.04 0/0:5:-0.00,-1.51,-20.43:15.05 0/0:5:-0.01,-1.52,-19.02:15.04
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20 60982 . G C 0.10 FDRtranche25.00to35.00+ AB=0.67;AC=2;AF=0.02;AN=98;DB=0;DP=180;Dels=0.00;HRun=1;HaplotypeScore=27.96;MQ=56.10;MQ0=0;OQ=12.72;QD=2.12;SB=-470.97 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-7.88:6.02 0/0:3:-0.01,-0.91,-10.93:9.03 0/0:3:-0.00,-0.90,-13.23:9.03 0/0:3:-0.00,-0.90,-12.93:9.03 0/0:4:-0.00,-1.21,-16.42:12.04 0/0:4:-0.00,-1.21,-17.67:12.04 0/0:4:-0.00,-1.21,-16.08:12.04 0/0:6:-0.00,-1.81,-24.41:18.06 0/0:3:-0.00,-0.91,-11.98:9.03 0/0:9:-0.02,-2.73,-34.14:27.08 0/0:5:-0.00,-1.51,-21.52:15.05 0/0:2:-0.00,-0.60,-8.38:6.02 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:2:-0.00,-0.60,-9.28:6.02 0/0:2:-0.00,-0.60,-7.84:6.02 0/1:3:-2.69,-0.92,-9.00:17.73 0/0:6:-0.03,-1.83,-23.71:18.03 0/0:2:-0.00,-0.60,-7.74:6.02 0/0:2:-0.00,-0.60,-7.84:6.02 0/0:2:-0.01,-0.61,-6.59:6.01 0/0:3:-0.00,-0.91,-12.03:9.03 0/0:2:-0.00,-0.60,-8.68:6.02 0/0:6:-0.00,-1.81,-24.72:18.06 0/0:4:-0.01,-1.22,-14.32:12.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.79:6.02 0/0:3:-0.00,-0.91,-10.99:9.03 0/0:3:-0.05,-0.95,-10.13:8.98 0/0:1:-0.00,-0.30,-4.49:3.01 0/0:4:-0.00,-1.21,-16.67:12.04 0/0:5:-0.00,-1.51,-20.27:15.05 0/0:1:-0.00,-0.30,-4.59:3.01 0/0:3:-0.01,-0.91,-11.43:9.03 0/0:1:-0.00,-0.30,-4.69:3.01 0/0:4:-0.01,-1.21,-15.28:12.04 0/0:2:-0.01,-0.61,-6.09:6.01 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:1:-0.00,-0.30,-4.39:3.01 0/0:2:-0.00,-0.61,-7.34:6.02 0/0:3:-0.00,-0.91,-11.98:9.03 0/0:3:-0.00,-0.91,-11.13:9.03 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.52,-17.92:15.04 ./.:-1:0,0,0:-1 0/0:2:-0.04,-0.63,-6.04:5.98 0/0:4:-0.01,-1.21,-15.42:12.04 0/1:2:-3.89,-0.60,-4.39:32.89 0/0:10:-0.01,-3.02,-41.48:30.10 0/0:9:-0.02,-2.72,-36.20:27.08
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20 61099 . T A 0.08 FDRtranche25.00to35.00+ AB=0.75;AC=3;AF=0.03;AN=98;DB=0;DP=163;Dels=0.00;HRun=0;HaplotypeScore=54.61;MQ=52.97;MQ0=0;OQ=10.14;QD=2.03;SB=-457.00 GT:DP:GL:GQ 1/1:1:-2.64,-0.30,-0.00:3.00 0/0:4:-0.00,-1.20,-14.36:12.03 0/0:2:-0.00,-0.60,-6.94:6.02 0/0:4:-0.01,-1.21,-11.59:12.01 0/0:5:-0.00,-1.51,-17.11:15.04 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:4:-0.00,-1.21,-13.18:12.02 0/0:4:-0.00,-1.21,-12.12:12.02 0/0:2:-0.03,-0.62,-5.00:5.94 0/0:7:-0.04,-2.14,-18.83:20.97 0/0:6:-0.01,-1.81,-20.01:18.04 0/0:2:-0.05,-0.64,-4.24:5.89 ./.:-1:0,0,0:-1 0/1:4:-3.34,-1.20,-11.14:21.35 0/0:5:-0.00,-1.51,-17.77:15.04 0/0:4:-0.02,-1.22,-12.58:12.00 0/0:4:-0.00,-1.20,-14.98:12.04 0/0:3:-0.03,-0.93,-7.68:8.94 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:7:-0.06,-2.15,-18.57:20.89 0/0:9:-0.18,-2.84,-21.81:26.56 0/0:3:-0.01,-0.91,-9.34:9.02 0/0:2:-0.00,-0.60,-6.28:6.01 0/0:1:-0.02,-0.32,-1.90:2.95 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:2:-0.00,-0.60,-6.98:6.02 0/0:2:-0.00,-0.60,-7.04:6.02 0/0:4:-0.02,-1.22,-11.19:11.99 0/0:2:-0.01,-0.61,-5.64:5.98 0/0:1:-0.00,-0.30,-3.90:3.01 0/0:1:-0.00,-0.30,-3.60:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:2:-0.00,-0.60,-5.98:6.01 0/0:2:-0.00,-0.61,-5.84:6.01 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:1:-0.02,-0.31,-2.00:2.97 0/0:3:-0.01,-0.91,-9.64:9.02 0/0:3:-0.02,-0.92,-8.54:8.98 ./.:-1:0,0,0:-1 0/0:3:-0.05,-0.94,-8.34:8.91 0/0:1:-0.00,-0.30,-3.80:3.01 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-12.53:12.00 0/0:2:-0.00,-0.60,-6.80:6.02 0/0:6:-0.01,-1.82,-18.59:18.03 0/0:7:-0.04,-2.14,-22.33:20.97
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20 61138 . C T 16.41 InDel AB=0.66;AC=2;AF=0.04;AN=98;DB=0;DP=103;Dels=0.00;HRun=12;HaplotypeScore=30.79;MQ=53.58;MQ0=1;QD=1.03;SB=-403.99 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.59:6.02 0/0:3:-0.00,-0.91,-9.36:9.01 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:3:-0.00,-0.90,-9.33:9.02 0/1:3:-3.27,-0.90,-7.07:23.63 0/0:2:-0.00,-0.60,-6.46:6.01 0/0:4:-0.01,-1.21,-11.70:12.02 0/0:2:-0.01,-0.61,-5.29:6.00 0/0:3:-0.00,-0.90,-10.09:9.02 0/0:2:-0.00,-0.60,-6.39:6.01 0/0:1:-0.00,-0.30,-2.57:3.00 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:3:-0.00,-0.90,-9.66:9.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:4:-0.04,-1.23,-9.10:11.88 0/0:1:-0.00,-0.30,-2.77:3.00 0/0:3:-0.00,-0.91,-9.09:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.80:3.00 0/0:3:-0.01,-0.91,-8.09:8.99 0/0:1:-0.00,-0.30,-3.50:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.31,-2.00:2.97 0/0:2:-0.00,-0.60,-6.69:6.02 0/0:4:-0.01,-1.21,-12.08:12.02 0/0:2:-0.00,-0.61,-5.89:6.00 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-9.26:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:1:-0.00,-0.30,-2.77:3.00 0/0:3:-0.01,-0.91,-8.99:9.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-6.89:6.02 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.01,-0.61,-5.36:5.98 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:5:-0.04,-1.53,-13.13:14.91 0/0:1:-0.00,-0.30,-3.60:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.49:6.02 0/0:1:-0.00,-0.30,-3.50:3.01 0/1:5:-4.04,-1.55,-9.34:24.90 0/0:2:-0.00,-0.60,-6.46:6.02
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20 61151 . A T 0.00 FDRtranche25.00to35.00+ AB=0.72;AC=3;AF=0.05;AN=98;DB=0;DP=95;Dels=0.00;HRun=12;HaplotypeScore=7.20;MQ=47.16;MQ0=8;OQ=29.80;QD=1.75;SB=-376.97 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.78:6.02 0/0:3:-0.00,-0.90,-10.62:9.03 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.05,-0.64,-4.94:5.90 0/1:4:-3.35,-1.21,-9.58:21.36 0/0:2:-0.00,-0.60,-7.04:6.02 0/1:4:-2.54,-1.21,-9.64:13.35 0/0:2:-0.00,-0.60,-6.88:6.02 0/0:2:-0.00,-0.60,-6.68:6.02 0/0:1:-0.00,-0.30,-3.64:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.64:3.01 0/0:2:-0.00,-0.60,-7.18:6.02 0/0:1:-0.00,-0.30,-3.24:3.01 0/0:3:-0.00,-0.90,-10.32:9.03 0/0:1:-0.00,-0.30,-3.44:3.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-13.26:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.24:3.01 0/0:2:-0.00,-0.60,-5.98:6.01 0/0:2:-0.00,-0.60,-6.78:6.02 0/0:2:-0.00,-0.60,-6.88:6.02 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:3:-0.00,-0.90,-9.88:9.02 0/0:4:-0.00,-1.21,-13.46:12.03 0/0:2:-0.00,-0.60,-6.88:6.02 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:4:-0.00,-1.21,-13.36:12.03 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.31,-2.20:2.98 0/0:2:-0.00,-0.60,-6.58:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:3:-0.00,-0.90,-10.08:9.02 ./.:-1:0,0,0:-1 0/0:2:-1.80,-2.23,-5.44:4.24 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-5.58:5.99 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.04:3.01 0/1:2:-3.70,-0.60,-3.24:26.37 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.02:9.02 0/0:2:-0.02,-0.62,-5.44:5.97
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20 61421 . A C 30.89 0 AC=4;AF=0.04;AN=98;DB=0;DP=195;Dels=0.00;HRun=0;HaplotypeScore=13.83;MQ=35.59;MQ0=44;OQ=21.62;QD=7.21;SB=-470.00 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-10.42:9.03 0/0:5:-0.00,-1.51,-18.21:15.05 0/0:1:-0.00,-0.30,-3.79:3.01 0/0:3:-0.00,-0.90,-10.32:9.03 0/0:3:-0.00,-0.90,-9.77:9.02 0/0:5:-0.00,-1.51,-16.15:15.03 0/0:4:-0.00,-1.20,-14.67:12.04 0/0:5:-0.00,-1.51,-16.76:15.04 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-17.21:15.04 0/0:5:-0.00,-1.51,-19.02:15.05 0/0:5:-0.01,-1.51,-14.79:14.99 0/0:1:-0.00,-0.30,-3.14:3.01 0/0:3:-0.00,-0.90,-10.83:9.03 1/1:1:-3.06,-0.30,-0.00:3.01 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:3:-0.00,-0.90,-9.53:9.01 0/0:2:-0.00,-0.60,-6.28:6.01 0/0:2:-0.00,-0.60,-6.59:6.02 0/0:2:-0.00,-0.60,-6.58:6.02 0/0:2:-0.00,-0.60,-6.58:6.02 0/0:3:-0.01,-0.91,-8.92:9.00 0/0:2:-0.00,-0.60,-6.43:6.01 0/0:3:-0.00,-0.90,-9.93:9.02 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:1:-0.00,-0.30,-3.59:3.01 0/0:1:-0.00,-0.30,-3.44:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.17:9.03 0/0:3:-0.00,-0.90,-9.72:9.02 0/0:2:-0.00,-0.60,-6.33:6.01 0/0:2:-0.00,-0.60,-6.18:6.01 0/0:3:-0.00,-0.90,-9.22:9.02 0/0:1:-0.00,-0.30,-2.64:3.00 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.02:9.02 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:2:-0.00,-0.60,-7.13:6.02 1/1:1:-2.96,-0.30,-0.00:3.01 0/0:1:-0.00,-0.30,-3.24:3.01 0/0:3:-0.00,-0.90,-9.72:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.30,-2.14:2.98 0/0:4:-0.00,-1.20,-13.31:12.03 0/0:5:-0.00,-1.51,-17.05:15.04 0/0:2:-0.00,-0.60,-6.63:6.02 0/0:5:-0.00,-1.51,-16.95:15.04
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20 61570 . G C 0.54 FDRtranche25.00to35.00+ AB=0.43;AC=4;AF=0.04;AN=98;DB=0;DP=175;Dels=0.00;HRun=3;HaplotypeScore=16.21;MQ=50.91;MQ0=0;OQ=35.86;QD=5.98;SB=-514.36 GT:DP:GL:GQ 0/0:6:-0.00,-1.81,-25.91:18.06 1/1:1:-2.69,-0.32,-0.02:3.00 0/0:5:-0.00,-1.51,-22.02:15.05 0/0:2:-0.00,-0.60,-8.64:6.02 0/0:2:-0.00,-0.60,-7.84:6.02 ./.:-1:0,0,0:-1 0/0:7:-0.01,-2.11,-27.96:21.07 0/0:1:-0.00,-0.30,-4.49:3.01 0/0:1:-0.00,-0.30,-3.05:3.01 0/0:5:-0.04,-1.54,-17.73:15.01 0/0:2:-0.00,-0.60,-8.78:6.02 0/0:3:-0.00,-0.91,-10.54:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-4.69:3.01 0/0:6:-0.01,-1.81,-22.82:18.05 0/0:4:-0.00,-1.21,-15.88:12.04 0/0:3:-0.00,-0.91,-11.89:9.03 0/0:3:-0.03,-0.93,-9.49:9.00 0/0:6:-0.05,-1.85,-18.73:18.01 0/0:4:-0.00,-1.21,-15.98:12.04 0/0:4:-0.00,-1.21,-15.39:12.04 0/0:4:-0.02,-1.22,-14.22:12.03 0/0:3:-0.00,-0.90,-11.99:9.03 0/0:3:-0.02,-0.92,-9.99:9.02 0/0:2:-0.00,-0.61,-6.89:6.02 0/0:1:-0.00,-0.30,-4.39:3.01 0/0:1:-0.01,-0.31,-2.75:3.00 0/0:2:-0.03,-0.63,-4.89:5.98 0/0:3:-0.00,-0.90,-12.83:9.03 0/0:1:-0.00,-0.30,-3.85:3.01 0/0:1:-0.00,-0.30,-4.39:3.01 0/0:5:-0.00,-1.51,-21.66:15.05 0/0:3:-0.01,-0.91,-10.93:9.02 0/0:3:-0.00,-0.90,-12.39:9.03 0/1:2:-2.65,-0.61,-3.56:20.37 0/0:6:-0.05,-1.85,-22.32:18.01 0/0:3:-0.00,-0.91,-10.84:9.03 0/0:7:-0.01,-2.12,-25.67:21.06 0/0:5:-0.01,-1.51,-19.82:15.05 0/0:2:-0.00,-0.61,-6.89:6.02 0/0:7:-0.01,-2.11,-26.32:21.06 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:2:-1.66,-1.87,-5.14:2.13 0/0:3:-0.00,-0.90,-12.63:9.03 0/1:2:-3.39,-0.61,-4.50:27.87 0/0:2:-0.00,-0.60,-7.84:6.02 0/0:2:-0.01,-0.61,-6.94:6.01 0/0:3:-0.00,-0.90,-11.99:9.03 0/0:7:-0.00,-2.11,-28.12:21.07
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20 61795 rs4814683 G T 4687.05 0 AB=0.48;AC=34;AF=0.37;AN=98;DB=1;DP=168;Dels=0.00;HRun=0;HaplotypeScore=24.86;MQ=57.09;MQ0=0;OQ=1647.58;QD=17.34;SB=-1279.01 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:3:-0.00,-0.90,-9.76:9.02 0/0:4:-0.00,-1.21,-14.13:12.04 0/0:2:-0.00,-0.60,-6.86:6.02 ./.:-1:0,0,0:-1 0/1:2:-3.70,-0.60,-3.20:25.99 0/1:5:-10.31,-1.53,-4.26:27.30 0/1:2:-3.60,-0.60,-3.10:24.99 0/0:4:-0.00,-1.21,-12.26:12.02 1/1:3:-9.93,-0.90,-0.00:9.02 0/0:5:-0.05,-1.52,-14.77:14.75 0/0:2:-0.00,-0.60,-5.96:6.00 1/1:1:-2.49,-0.30,-0.00:3.00 0/0:2:-0.00,-0.60,-6.00:6.01 0/1:2:-3.24,-0.60,-3.10:24.99 0/0:2:-0.00,-0.60,-5.66:6.01 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:8:-0.01,-2.41,-24.66:24.05 0/1:4:-6.69,-1.21,-6.02:48.09 0/0:3:-0.00,-0.90,-9.92:9.02 1/1:1:-3.24,-0.30,-0.00:3.01 0/1:5:-7.52,-1.51,-6.22:47.07 1/1:3:-9.53,-0.90,-0.00:9.02 0/0:4:-0.01,-1.21,-10.40:11.99 0/0:3:-0.00,-0.90,-9.46:9.02 0/1:4:-6.03,-1.21,-6.30:48.29 0/0:5:-0.04,-1.53,-13.76:14.91 0/1:3:-6.83,-0.90,-3.16:22.54 0/1:5:-10.17,-1.51,-6.46:49.53 0/1:6:-15.26,-1.81,-2.61:8.01 0/1:4:-4.98,-1.21,-5.87:37.70 0/0:6:-0.01,-1.81,-18.53:18.02 0/0:3:-0.01,-0.91,-7.82:8.99 0/1:2:-3.90,-0.60,-3.20:25.98 0/0:3:-0.00,-0.90,-9.00:9.01 1/1:1:-3.24,-0.30,-0.00:3.01 1/1:2:-5.58,-0.60,-0.00:6.00 0/0:1:-0.00,-0.30,-2.96:3.01 0/1:6:-16.06,-1.81,-3.20:13.96 0/0:3:-0.00,-0.90,-9.22:9.02 1/1:4:-12.37,-1.21,-0.00:12.02 ./.:-1:0,0,0:-1 0/1:7:-9.66,-2.13,-10.82:75.32 0/0:2:-0.00,-0.60,-6.51:6.02 1/1:2:-6.73,-0.60,-0.00:6.02 0/0:3:-0.01,-0.91,-8.56:9.00 0/1:6:-12.79,-1.82,-4.46:26.38 1/1:2:-6.13,-0.60,-0.00:6.01 0/1:4:-6.63,-1.21,-6.56:53.54
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20 61809 . T C 28.51 0 AB=0.50;AC=1;AF=0.01;AN=98;DB=0;DP=151;Dels=0.00;HRun=0;HaplotypeScore=24.29;MQ=56.95;MQ0=0;OQ=21.95;QD=5.49;SB=-505.67 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:6:-0.00,-1.81,-22.35:18.06 0/0:6:-0.01,-1.81,-21.30:18.05 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:2:-0.00,-0.60,-7.61:6.02 0/0:4:-0.00,-1.21,-15.65:12.04 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:2:-0.02,-0.62,-5.93:5.99 0/1:3:-6.66,-0.90,-3.96:30.53 0/0:2:-0.01,-0.61,-6.23:6.00 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:2:-0.00,-0.60,-7.31:6.02 0/0:4:-0.00,-1.21,-15.32:12.04 0/0:2:-0.00,-0.60,-6.83:6.02 0/0:1:-0.00,-0.30,-3.67:3.01 0/0:2:-0.00,-0.60,-7.82:6.02 0/0:6:-0.00,-1.81,-22.13:18.06 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:4:-0.00,-1.21,-14.35:12.04 0/0:2:-0.00,-0.60,-7.33:6.02 0/0:8:-0.01,-2.41,-28.08:24.07 0/0:3:-0.01,-0.91,-9.99:9.02 0/0:4:-0.00,-1.21,-14.82:12.04 0/0:1:-0.00,-0.30,-3.57:3.01 0/0:4:-0.02,-1.22,-13.25:12.01 0/0:3:-0.02,-0.92,-8.79:9.00 0/0:2:-1.74,-2.11,-5.76:3.72 0/0:4:-0.00,-1.21,-15.03:12.04 0/0:6:-0.01,-1.82,-20.65:18.03 0/0:2:-0.01,-0.61,-6.03:6.00 0/0:4:-0.00,-1.21,-14.65:12.04 0/0:2:-0.00,-0.60,-7.12:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.02,-0.62,-4.82:5.98 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.42:6.02 0/0:5:-0.00,-1.51,-18.10:15.05 0/0:6:-0.01,-1.82,-20.38:18.04 0/0:5:-0.00,-1.51,-17.50:15.04 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-13.85:12.03 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-7.21:6.02 0/0:3:-0.00,-0.90,-10.48:9.03 0/0:1:-0.00,-0.30,-3.57:3.01 0/0:5:-0.00,-1.51,-18.01:15.05
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20 62045 . C A 0.01 FDRtranche25.00to35.00+ AB=0.62;AC=3;AF=0.03;AN=98;DB=0;DP=139;Dels=0.00;HRun=2;HaplotypeScore=22.04;MQ=57.15;MQ0=0;OQ=17.30;QD=1.57;SB=-431.00 GT:DP:GL:GQ 0/0:2:-0.01,-0.60,-5.46:5.99 0/0:2:-0.00,-0.60,-6.60:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:7:-0.02,-2.12,-19.23:20.98 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.60,-4.90:5.97 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:4:-0.02,-1.21,-11.20:11.89 0/0:3:-0.00,-0.90,-8.96:9.01 0/0:2:-0.04,-0.62,-4.76:5.79 0/0:3:-0.01,-0.91,-7.86:8.99 0/0:1:-0.03,-0.31,-1.40:2.83 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.76:9.00 0/1:4:-3.62,-1.25,-4.40:23.73 0/0:2:-0.00,-0.60,-7.01:6.02 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.02,-0.61,-4.80:5.88 0/1:4:-3.02,-1.21,-7.36:18.03 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-11.92:12.01 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:4:-0.00,-1.21,-11.92:12.02 0/0:4:-0.00,-1.21,-12.43:12.02 0/0:4:-0.01,-1.21,-11.32:11.97 0/0:2:-0.00,-0.60,-5.91:6.01 0/0:3:-0.01,-0.91,-7.56:8.95 0/0:3:-0.01,-0.91,-8.12:8.98 0/0:2:-0.05,-0.62,-3.80:5.72 0/0:2:-0.06,-0.62,-2.80:5.61 0/0:3:-0.00,-0.90,-9.92:9.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:4:-0.00,-1.21,-12.97:12.03 0/0:4:-0.00,-1.21,-12.42:12.03 0/0:3:-0.00,-0.90,-8.50:9.01 0/0:3:-0.00,-0.91,-8.82:9.01 0/0:4:-0.02,-1.21,-10.77:11.96 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:1:-0.00,-0.30,-2.30:2.99 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:4:-0.00,-1.21,-12.77:12.03 ./.:-1:0,0,0:-1 0/1:3:-2.40,-0.91,-5.16:14.93
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20 62209 . C A 0.00 FDRtranche25.00to35.00+ AB=0.67;AC=4;AF=0.05;AN=98;DB=0;DP=107;Dels=0.00;HRun=4;HaplotypeScore=8.55;MQ=58.55;MQ0=0;OQ=24.75;QD=1.55;SB=-398.21 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-8.86:9.01 0/0:2:-0.00,-0.60,-6.50:6.02 0/0:1:-0.00,-0.30,-2.86:3.00 0/0:2:-0.00,-0.60,-5.80:6.01 0/0:2:-0.00,-0.60,-6.10:6.01 0/0:2:-0.00,-0.60,-6.76:6.02 0/0:2:-0.00,-0.60,-6.60:6.02 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:2:-0.00,-0.60,-5.91:6.01 0/0:2:-0.00,-0.60,-6.30:6.01 0/0:2:-0.01,-0.61,-5.66:6.00 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.52:9.02 0/0:5:-0.01,-1.51,-14.62:14.97 0/0:5:-0.01,-1.51,-15.12:15.02 0/0:3:-0.00,-0.90,-9.56:9.02 0/0:4:-0.05,-1.22,-10.26:11.73 0/0:2:-0.00,-0.60,-5.70:6.00 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.00:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.76:6.01 0/1:3:-3.30,-0.90,-6.46:23.92 0/1:3:-1.90,-0.92,-4.62:9.84 0/0:1:-0.00,-0.30,-3.20:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:3:-0.01,-0.91,-8.36:8.99 0/0:1:-0.00,-0.30,-3.26:3.01 0/1:6:-2.21,-1.82,-14.07:3.91 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:1:-0.01,-0.31,-1.80:2.94 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:1:-0.00,-0.30,-3.10:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-5.06:5.95 0/0:5:-1.60,-1.53,-12.71:2.69 0/1:3:-3.40,-0.90,-6.16:24.92 0/0:2:-0.00,-0.60,-5.56:6.00 0/0:1:-0.00,-0.30,-2.30:2.99 ./.:-1:0,0,0:-1 0/0:2:-0.05,-0.62,-3.90:5.72 0/0:2:-0.01,-0.61,-4.81:5.98 0/0:3:-0.03,-0.92,-6.92:8.90 0/0:3:-0.00,-0.90,-9.10:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.50:3.00
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20 62555 . C A 0.71 FDRtranche25.00to35.00+ AB=0.65;AC=3;AF=0.03;AN=98;DB=0;DP=145;Dels=0.00;HRun=0;HaplotypeScore=10.83;MQ=50.97;MQ0=2;OQ=29.89;QD=2.99;SB=-521.60 GT:DP:GL:GQ 0/0:4:-0.01,-1.21,-12.27:12.01 0/1:4:-3.26,-1.21,-8.16:20.49 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:7:-0.01,-2.11,-22.19:21.05 0/0:1:-0.00,-0.30,-2.90:3.00 0/0:2:-0.00,-0.60,-6.21:6.01 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:4:-0.00,-1.21,-13.37:12.03 0/0:3:-0.00,-0.90,-9.66:9.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-6.30:6.01 0/0:3:-0.00,-0.90,-9.92:9.02 0/0:5:-0.04,-1.53,-13.53:14.91 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:1:-0.00,-0.30,-3.30:3.01 0/1:4:-3.46,-1.24,-5.46:22.19 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:4:-0.00,-1.21,-12.20:12.02 0/0:3:-0.00,-0.90,-9.90:9.02 0/0:5:-0.00,-1.51,-15.02:15.03 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:4:-0.00,-1.21,-12.42:12.03 0/0:3:-0.00,-0.90,-9.66:9.02 0/1:2:-3.30,-0.60,-3.26:26.55 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:1:-0.00,-0.30,-2.30:2.99 0/0:2:-0.00,-0.60,-6.10:6.01 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:5:-0.00,-1.51,-16.72:15.04 0/0:5:-0.01,-1.51,-14.72:15.00 0/0:2:-0.00,-0.60,-5.50:6.00 0/0:5:-0.01,-1.51,-14.52:15.01 0/0:5:-0.04,-1.53,-14.22:14.91 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.46:9.02 0/0:4:-0.00,-1.21,-12.62:12.03 0/0:4:-0.00,-1.21,-12.06:12.02 0/0:3:-0.02,-0.92,-7.66:8.94 0/0:1:-0.01,-0.31,-1.80:2.94 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:2:-0.00,-0.60,-6.76:6.02 0/0:2:-0.01,-0.60,-5.36:5.99 0/0:4:-0.00,-1.21,-11.96:12.02 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:3:-0.01,-0.91,-7.50:8.97 0/0:2:-0.00,-0.60,-6.81:6.02
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20 62731 rs34147676 C A 7869.46 0 AB=0.46;AC=15;AF=0.19;AN=98;DB=1;DP=143;Dels=0.00;HRun=1;HaplotypeScore=13.72;MQ=50.37;MQ0=5;OQ=876.78;QD=16.54;SB=-888.91 GT:DP:GL:GQ 0/0:5:-0.01,-1.51,-13.72:14.99 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:4:-0.00,-1.20,-13.87:12.03 ./.:-1:0,0,0:-1 0/0:7:-0.01,-2.11,-21.77:21.05 1/1:4:-12.37,-1.21,-0.00:12.02 0/0:1:-0.00,-0.30,-3.60:3.01 0/1:6:-12.46,-1.81,-6.06:42.51 0/0:3:-0.00,-0.90,-9.66:9.02 0/1:8:-8.68,-2.42,-15.49:62.55 0/0:3:-0.00,-0.90,-9.02:9.01 0/0:4:-0.01,-1.21,-11.77:12.01 0/0:1:-0.00,-0.30,-3.46:3.01 1/1:1:-3.04,-0.30,-0.00:3.01 0/0:3:-0.00,-0.90,-9.70:9.02 0/0:3:-0.01,-0.91,-8.06:8.95 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:7:-0.02,-2.12,-21.73:21.01 0/0:2:-0.05,-0.63,-4.76:5.85 0/0:2:-0.00,-0.60,-6.60:6.02 0/1:4:-6.68,-1.21,-6.32:51.09 0/1:5:-10.49,-1.51,-5.96:44.52 0/1:6:-16.32,-1.81,-3.36:15.52 0/0:5:-0.00,-1.51,-16.03:15.04 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:3:-0.00,-0.90,-9.70:9.02 0/0:2:-0.00,-0.60,-5.86:6.00 0/0:3:-0.00,-0.90,-9.90:9.02 0/1:3:-5.28,-0.91,-3.41:25.03 0/0:2:-0.04,-0.62,-4.76:5.79 0/0:4:-0.00,-1.21,-13.52:12.03 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:1:-0.00,-0.30,-3.30:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:2:-0.01,-0.61,-4.60:5.94 ./.:-1:0,0,0:-1 0/1:4:-5.66,-1.22,-5.02:38.00 0/0:1:-0.00,-0.30,-3.46:3.01 0/1:2:-3.14,-0.60,-3.20:25.37 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:1:-0.00,-0.30,-3.06:3.01 ./.:-1:0,0,0:-1 1/1:1:-3.49,-0.30,-0.00:3.01 0/1:4:-6.97,-1.23,-4.86:36.31
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20 63231 rs6076506 T G 799.40 0 AB=0.33;AC=2;AF=0.02;AN=98;DB=1;DP=98;Dels=0.00;HRun=0;HaplotypeScore=9.95;MQ=58.46;MQ0=0;OQ=70.95;QD=11.82;SB=-484.11 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-10.83:9.03 0/0:2:-0.00,-0.60,-6.33:6.01 0/1:3:-6.40,-0.90,-3.80:28.92 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.79:3.01 0/0:1:-0.00,-0.30,-3.49:3.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.20,-14.07:12.03 0/0:1:-0.00,-0.30,-2.44:2.99 0/0:2:-0.00,-0.60,-6.63:6.01 0/0:2:-0.00,-0.60,-6.83:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-13.92:12.03 0/0:1:-0.00,-0.30,-3.79:3.01 0/0:3:-0.00,-0.90,-9.27:9.02 0/0:1:-0.00,-0.30,-3.64:3.01 0/0:5:-0.00,-1.51,-16.31:15.03 0/0:2:-0.05,-0.62,-4.58:5.75 0/0:3:-0.00,-0.90,-10.43:9.03 0/0:1:-0.00,-0.30,-3.29:3.01 0/0:3:-0.00,-0.90,-9.92:9.02 0/0:2:-0.00,-0.60,-6.83:6.02 0/0:2:-0.00,-0.60,-7.13:6.02 0/0:2:-0.00,-0.60,-7.03:6.02 0/0:4:-0.00,-1.21,-13.67:12.03 0/0:3:-0.00,-0.90,-10.27:9.03 0/0:3:-0.00,-0.90,-10.53:9.03 0/0:2:-0.00,-0.60,-7.19:6.02 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:1:-0.00,-0.30,-3.14:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.59:3.01 0/0:3:-0.00,-0.90,-10.73:9.03 0/0:2:-0.00,-0.60,-6.83:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.99:6.02 0/1:3:-6.31,-0.90,-3.44:25.36 0/0:2:-0.00,-0.60,-6.73:6.02 0/0:1:-0.00,-0.30,-3.39:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.17:9.03 0/0:1:-0.00,-0.30,-3.54:3.01 0/0:1:-0.00,-0.30,-3.59:3.01 ./.:-1:0,0,0:-1 0/0:4:-0.02,-1.21,-11.21:11.93 0/0:1:-0.00,-0.30,-3.04:3.01 0/0:3:-0.00,-0.90,-10.27:9.03
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20 63244 rs6139074 A C 250.85 0 AB=0.49;AC=12;AF=0.15;AN=98;DB=1;DP=88;Dels=0.00;HRun=1;HaplotypeScore=4.87;MQ=58.21;MQ0=0;OQ=400.62;QD=19.08;SB=-494.96 GT:DP:GL:GQ 0/0:2:-0.01,-0.61,-4.78:5.95 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.58:6.02 0/0:1:-0.03,-0.32,-1.69:2.92 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:1:-0.00,-0.30,-3.04:3.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-13.27:12.03 ./.:-1:0,0,0:-1 0/1:3:-3.30,-0.90,-6.08:23.98 0/0:3:-0.00,-0.90,-10.57:9.03 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-15.91:15.02 0/0:1:-0.00,-0.30,-2.74:3.00 0/0:2:-0.00,-0.60,-6.69:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.23:6.01 0/1:2:-2.90,-0.60,-3.40:22.98 0/0:1:-0.00,-0.30,-3.49:3.01 0/0:1:-0.00,-0.30,-2.94:3.01 0/0:2:-0.00,-0.60,-6.69:6.02 1/1:3:-9.12,-0.91,-0.01:9.01 ./.:-1:0,0,0:-1 0/1:4:-9.82,-1.21,-3.34:21.35 1/1:2:-6.71,-0.60,-0.00:6.02 0/0:4:-0.02,-1.21,-12.32:11.93 0/1:4:-6.72,-1.21,-6.03:48.29 1/1:2:-6.41,-0.60,-0.00:6.02 0/0:3:-0.00,-0.90,-8.42:9.01 0/0:1:-0.00,-0.30,-3.19:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.87:8.98 0/0:1:-0.00,-0.30,-3.79:3.01 0/0:2:-0.01,-0.61,-5.43:5.97 0/0:1:-0.00,-0.30,-3.34:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.93:6.02 1/1:1:-3.36,-0.30,-0.00:3.01 0/0:1:-0.00,-0.30,-3.04:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.89:6.02 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:1:-0.04,-0.32,-1.34:2.80 ./.:-1:0,0,0:-1 0/0:7:-0.00,-2.11,-23.50:21.06 0/0:2:-0.00,-0.60,-6.53:6.02 0/0:3:-0.00,-0.90,-10.13:9.02
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20 63452 . C G 21.58 0 AB=0.73;AC=6;AF=0.06;AN=98;DB=0;DP=230;Dels=0.00;HRun=0;HaplotypeScore=51.03;MQ=56.49;MQ0=0;OQ=158.93;QD=13.24;SB=-594.31 GT:DP:GL:GQ 0/0:7:-0.02,-2.12,-25.52:21.06 0/0:3:-0.00,-0.91,-12.68:9.03 0/0:3:-0.01,-0.91,-10.29:9.02 0/0:4:-0.00,-1.21,-15.73:12.04 0/0:3:-0.00,-0.91,-11.09:9.03 0/0:1:-0.00,-0.30,-3.55:3.01 0/0:5:-0.02,-1.52,-17.48:15.03 0/0:6:-0.00,-1.81,-24.42:18.06 0/0:2:-0.00,-0.60,-7.88:6.02 0/0:8:-0.01,-2.41,-31.50:24.08 0/0:4:-0.00,-1.21,-16.48:12.04 0/0:3:-0.01,-0.91,-10.09:9.02 0/0:5:-0.01,-1.51,-18.63:15.05 0/0:4:-0.00,-1.21,-15.78:12.04 0/0:3:-0.00,-0.90,-11.89:9.03 0/0:2:-0.00,-0.60,-8.14:6.02 0/0:2:-0.00,-0.60,-8.88:6.02 0/0:6:-0.01,-1.81,-22.62:18.06 0/0:5:-0.05,-1.55,-18.92:15.03 0/0:3:-0.00,-0.91,-11.19:9.03 0/0:7:-0.00,-2.11,-27.96:21.07 0/0:10:-0.02,-3.03,-36.79:30.09 0/0:5:-0.02,-1.52,-18.97:15.04 0/0:2:-0.00,-0.60,-8.14:6.02 0/1:3:-3.45,-0.91,-7.54:25.43 0/0:4:-0.02,-1.22,-13.98:12.03 0/0:5:-0.01,-1.51,-18.43:15.05 0/0:2:-0.00,-0.60,-7.19:6.02 0/0:7:-0.01,-2.11,-27.51:21.07 0/0:3:-0.00,-0.90,-11.99:9.03 0/0:2:-0.00,-0.60,-7.39:6.02 0/0:2:-0.00,-0.60,-7.59:6.02 0/0:1:-0.00,-0.30,-3.85:3.01 1/1:1:-3.75,-0.30,-0.00:3.01 0/0:8:-0.01,-2.42,-29.46:24.07 0/0:10:-0.02,-3.03,-36.45:30.08 0/0:6:-0.01,-1.81,-22.72:18.05 0/0:4:-0.00,-1.21,-14.63:12.04 0/0:6:-0.01,-1.81,-20.98:18.05 0/0:6:-0.00,-1.81,-23.42:18.06 1/1:3:-11.58,-0.91,-0.01:9.03 0/0:1:-0.00,-0.30,-4.19:3.01 0/0:3:-0.01,-0.91,-11.23:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:4:-0.00,-1.21,-15.92:12.04 0/1:5:-3.65,-1.51,-15.53:21.41 0/0:9:-0.01,-2.72,-33.16:27.08 0/0:9:-0.01,-2.71,-34.17:27.09
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20 63559 . C A 610.99 0 AC=2;AF=0.02;AN=98;DB=0;DP=150;Dels=0.00;HRun=0;HaplotypeScore=12.87;MQ=58.62;MQ0=0;OQ=28.38;QD=14.19;SB=-512.39 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-10.42:9.03 0/0:1:-0.00,-0.30,-3.20:3.01 1/1:2:-6.53,-0.60,-0.00:6.02 0/0:2:-0.00,-0.60,-6.20:6.01 0/0:2:-0.00,-0.60,-5.86:6.00 0/0:2:-0.00,-0.60,-6.00:6.01 0/0:4:-0.00,-1.21,-12.96:12.02 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-9.16:9.01 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:2:-0.01,-0.61,-5.01:5.98 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:2:-0.00,-0.60,-6.00:6.01 0/0:4:-0.02,-1.21,-9.40:11.93 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:4:-0.00,-1.21,-13.12:12.03 0/0:7:-0.01,-2.11,-21.53:21.03 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:7:-0.02,-2.11,-21.00:20.97 0/0:6:-0.01,-1.81,-17.52:18.01 0/0:4:-0.00,-1.21,-11.96:12.02 0/0:5:-0.01,-1.51,-15.37:15.03 0/0:3:-0.01,-0.91,-8.66:9.01 0/0:4:-0.00,-1.21,-12.27:12.02 0/0:3:-0.00,-0.90,-9.06:9.02 0/0:1:-0.04,-0.31,-1.30:2.78 0/0:4:-0.02,-1.21,-11.62:11.98 0/0:4:-0.00,-1.21,-13.07:12.03 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:3:-0.00,-0.90,-9.97:9.02 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:2:-0.02,-0.61,-4.80:5.88 0/0:5:-0.02,-1.52,-14.67:14.98 0/0:4:-0.01,-1.21,-10.90:12.00 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:6:-0.03,-1.82,-17.16:17.87 0/0:5:-0.00,-1.51,-15.82:15.04 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-14.86:15.02 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.42:12.03 0/0:1:-0.00,-0.30,-3.20:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.03,-0.92,-6.76:8.89 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:3:-0.00,-0.90,-8.66:9.01 0/0:5:-0.00,-1.51,-15.26:15.03
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20 63728 . G T 0.02 FDRtranche25.00to35.00+ AB=0.65;AC=2;AF=0.02;AN=98;DB=0;DP=148;Dels=0.00;HRun=1;HaplotypeScore=21.80;MQ=58.24;MQ0=0;OQ=18.99;QD=1.36;SB=-465.43 GT:DP:GL:GQ 0/0:4:-0.01,-1.21,-12.26:12.00 0/0:2:-0.00,-0.60,-6.80:6.02 0/0:5:-0.00,-1.51,-15.62:15.03 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:8:-0.03,-2.42,-23.87:23.92 0/0:1:-0.00,-0.30,-3.56:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:4:-0.00,-1.20,-13.16:12.03 0/0:2:-0.00,-0.60,-6.26:6.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.56:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.46:9.02 0/0:3:-0.02,-0.91,-7.86:8.92 0/0:3:-0.00,-0.90,-10.56:9.03 0/0:2:-0.01,-0.61,-4.10:5.94 0/0:4:-0.01,-1.21,-11.73:12.00 0/0:4:-0.00,-1.21,-13.57:12.03 0/0:2:-0.00,-0.60,-6.66:6.02 0/1:9:-5.46,-2.73,-20.08:27.32 0/0:5:-0.00,-1.51,-15.97:15.03 0/0:5:-0.03,-1.51,-13.56:14.89 0/0:7:-0.03,-2.12,-19.92:20.90 0/0:1:-0.00,-0.30,-2.30:2.99 0/0:4:-0.00,-1.21,-13.07:12.03 0/0:2:-0.00,-0.60,-5.36:6.00 0/0:5:-0.05,-1.52,-14.27:14.75 0/0:2:-0.00,-0.60,-6.60:6.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:3:-0.01,-0.91,-8.36:9.01 0/0:1:-0.00,-0.30,-3.36:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:4:-0.01,-1.21,-10.16:11.98 0/0:1:-0.04,-0.31,-1.30:2.78 0/0:2:-0.00,-0.60,-5.76:6.01 0/0:2:-0.01,-0.61,-5.10:5.96 0/1:4:-4.21,-1.25,-3.65:24.04 0/0:3:-0.03,-0.91,-6.96:8.87 ./.:-1:0,0,0:-1 0/0:3:-0.03,-0.91,-5.90:8.85 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.60,-5.46:5.99 0/0:3:-0.00,-0.91,-9.27:9.02 0/0:3:-0.01,-0.91,-7.46:8.94 0/0:3:-0.00,-0.90,-8.86:9.01
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20 65900 rs6053810 G A 221.04 0 AB=0.44;AC=72;AF=0.80;AN=98;DB=1;DP=189;Dels=0.00;HRun=0;HaplotypeScore=10.68;MQ=49.53;MQ0=1;OQ=6421.69;QD=34.90;SB=-3218.27 GT:DP:GL:GQ 1/1:4:-13.96,-1.21,-0.01:12.03 1/1:3:-11.99,-0.90,-0.00:9.03 1/1:4:-14.63,-1.21,-0.00:12.04 1/1:3:-10.97,-0.90,-0.00:9.03 1/1:2:-7.13,-0.60,-0.00:6.02 1/1:5:-18.40,-1.51,-0.00:15.04 1/1:1:-3.96,-0.30,-0.00:3.01 1/1:5:-18.81,-1.51,-0.00:15.05 1/1:4:-15.22,-1.21,-0.00:12.04 0/1:2:-3.86,-0.60,-2.80:21.93 ./.:-1:0,0,0:-1 1/1:4:-15.03,-1.21,-0.00:12.04 0/1:3:-7.74,-0.91,-2.70:17.91 1/1:3:-11.29,-0.90,-0.00:9.03 0/1:4:-8.04,-1.21,-6.14:49.32 1/1:7:-26.23,-2.11,-0.00:21.06 1/1:8:-30.38,-2.41,-0.00:24.08 1/1:4:-15.03,-1.21,-0.00:12.04 0/0:1:-0.00,-0.30,-2.77:3.00 1/1:3:-11.49,-0.90,-0.00:9.03 0/1:4:-9.80,-1.22,-2.92:16.95 1/1:4:-14.23,-1.21,-0.00:12.04 0/1:2:-3.67,-0.61,-2.10:14.87 1/1:1:-1.77,-0.34,-0.05:2.93 0/1:4:-8.04,-1.21,-5.59:43.85 0/0:1:-0.02,-0.31,-1.67:2.91 1/1:5:-18.29,-1.51,-0.00:15.05 0/1:6:-14.76,-1.83,-4.77:29.39 1/1:3:-11.69,-0.90,-0.00:9.03 1/1:9:-31.56,-2.72,-0.01:27.07 1/1:3:-10.08,-0.91,-0.01:9.02 1/1:6:-22.37,-1.81,-0.01:18.05 1/1:3:-11.29,-0.90,-0.00:9.03 0/1:5:-11.18,-1.51,-6.07:45.59 ./.:-1:0,0,0:-1 1/1:5:-18.01,-1.51,-0.00:15.04 0/1:6:-11.71,-1.81,-8.06:62.49 1/1:3:-11.39,-0.90,-0.00:9.03 0/1:4:-11.18,-1.21,-2.97:17.64 1/1:5:-19.02,-1.51,-0.00:15.05 0/1:2:-3.87,-0.60,-3.07:24.66 0/0:1:-0.01,-0.31,-2.30:2.99 ./.:-1:0,0,0:-1 1/1:1:-3.76,-0.30,-0.00:3.01 0/0:2:-0.00,-0.60,-5.86:6.01 0/1:2:-3.98,-0.61,-2.20:15.88 1/1:4:-15.22,-1.21,-0.00:12.04 1/1:2:-7.11,-0.60,-0.00:6.02 1/1:7:-26.27,-2.11,-0.00:21.07
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20 65951 . T C 1181.83 0 AB=0.38;AC=1;AF=0.01;AN=98;DB=0;DP=184;Dels=0.00;HRun=0;HaplotypeScore=10.32;MQ=57.28;MQ0=0;OQ=85.14;QD=10.64;SB=-529.85 GT:DP:GL:GQ 0/0:3:-0.00,-0.91,-10.38:9.02 0/0:4:-0.00,-1.21,-14.53:12.04 0/0:2:-0.00,-0.60,-7.72:6.02 0/0:2:-0.00,-0.60,-6.52:6.01 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:2:-0.00,-0.60,-8.12:6.02 0/0:2:-0.00,-0.60,-7.83:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.99:9.03 0/0:3:-0.00,-0.91,-10.19:9.02 0/0:2:-0.01,-0.61,-5.63:6.00 ./.:-1:0,0,0:-1 0/0:8:-0.00,-2.41,-31.09:24.08 0/0:5:-0.00,-1.51,-19.40:15.05 0/0:3:-0.00,-0.90,-11.40:9.03 0/0:2:-0.00,-0.60,-8.03:6.02 0/0:4:-0.00,-1.21,-15.05:12.04 0/0:3:-0.00,-0.90,-10.98:9.03 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:2:-0.01,-0.61,-6.52:6.01 0/0:11:-0.02,-3.33,-38.50:33.07 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:2:-0.00,-0.60,-6.61:6.01 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:3:-0.00,-0.90,-10.69:9.03 0/0:7:-0.00,-2.11,-26.87:21.07 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-15.46:12.04 0/0:1:-0.00,-0.30,-3.57:3.01 0/0:4:-0.00,-1.21,-14.27:12.04 0/0:1:-0.00,-0.30,-3.97:3.01 0/0:4:-0.00,-1.21,-15.67:12.04 0/0:4:-0.00,-1.21,-15.67:12.04 0/0:7:-0.00,-2.11,-27.06:21.07 0/0:7:-0.00,-2.11,-26.86:21.07 0/0:7:-0.00,-2.11,-25.53:21.06 0/0:5:-0.01,-1.51,-18.24:15.04 0/0:6:-0.00,-1.81,-22.06:18.06 0/0:7:-0.01,-2.11,-25.87:21.06 0/1:8:-14.50,-2.41,-11.51:90.95 0/0:3:-0.00,-0.90,-11.29:9.03 0/0:4:-0.00,-1.21,-14.13:12.04 0/0:1:-0.00,-0.30,-3.97:3.01 0/0:3:-0.00,-0.90,-11.19:9.03 0/0:3:-0.00,-0.90,-11.30:9.03 0/0:2:-0.01,-0.61,-6.43:6.01 0/0:2:-0.00,-0.60,-7.63:6.02 0/0:5:-0.00,-1.51,-18.10:15.05
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20 66055 . A T 0.46 FDRtranche25.00to35.00+ AB=0.62;AC=2;AF=0.02;AN=98;DB=0;DP=149;Dels=0.00;HRun=0;HaplotypeScore=25.78;MQ=45.44;MQ0=10;OQ=12.58;QD=1.80;SB=-512.52 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-4.00:3.01 0/0:4:-0.03,-1.23,-12.78:11.96 0/0:2:-0.00,-0.60,-6.94:6.02 0/0:1:-0.00,-0.30,-3.44:3.01 0/1:3:-5.21,-2.66,-5.56:25.53 0/0:2:-0.00,-0.60,-7.70:6.02 0/0:1:-0.00,-0.30,-3.90:3.01 0/0:6:-0.01,-1.81,-20.41:18.04 0/0:1:-0.00,-0.30,-3.90:3.01 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:2:-0.00,-0.60,-7.00:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.70:9.03 0/0:1:-0.00,-0.30,-3.90:3.01 0/0:2:-0.00,-0.60,-6.74:6.02 0/0:1:-0.00,-0.30,-3.90:3.01 0/0:5:-0.03,-1.53,-14.51:14.96 0/0:3:-0.00,-0.90,-10.48:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.05,-0.33,-1.34:2.79 0/0:5:-0.01,-1.51,-16.33:15.04 0/0:3:-0.00,-0.90,-9.58:9.02 0/0:1:-0.00,-0.30,-2.94:3.01 0/0:4:-0.01,-1.21,-12.52:12.02 0/0:2:-0.00,-0.60,-7.10:6.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:4:-0.00,-1.21,-13.32:12.03 0/0:4:-0.00,-1.21,-13.58:12.03 0/0:3:-0.00,-0.90,-10.24:9.03 0/0:3:-0.00,-0.90,-10.02:9.02 0/0:4:-0.00,-1.21,-13.83:12.03 0/0:1:-0.00,-0.30,-3.90:3.01 0/0:4:-0.00,-1.21,-12.82:12.03 0/0:7:-0.00,-2.11,-25.47:21.06 0/0:5:-0.00,-1.51,-16.61:15.04 0/1:4:-3.70,-1.21,-10.28:24.95 0/0:1:-0.00,-0.30,-3.24:3.01 0/0:4:-0.00,-1.21,-13.53:12.03 0/0:2:-0.00,-0.60,-6.44:6.02 0/0:1:-0.00,-0.30,-3.24:3.01 0/0:3:-0.00,-0.90,-10.64:9.03 0/0:1:-0.01,-0.31,-1.94:2.96 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-6.50:6.01 0/0:3:-0.00,-0.90,-9.84:9.02 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-15.96:15.01
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20 66370 rs6054257 G A 550.25 0 AB=0.55;AC=75;AF=0.88;AN=98;DB=1;DP=127;Dels=0.00;HRun=0;HaplotypeScore=7.22;MQ=51.01;MQ0=1;OQ=4120.66;QD=33.78;SB=-2218.14 GT:DP:GL:GQ 1/1:4:-13.46,-1.21,-0.01:12.02 1/1:3:-9.58,-0.92,-0.02:8.99 1/1:2:-6.42,-0.61,-0.01:6.01 ./.:-1:0,0,0:-1 1/1:5:-18.31,-1.51,-0.00:15.05 1/1:1:-3.37,-0.30,-0.00:3.01 0/1:3:-7.82,-0.90,-3.27:23.65 1/1:2:-7.11,-0.60,-0.00:6.02 1/1:1:-3.37,-0.30,-0.00:3.01 1/1:2:-7.03,-0.60,-0.00:6.02 1/1:1:-3.86,-0.30,-0.00:3.01 1/1:1:-3.27,-0.30,-0.00:3.01 1/1:1:-3.66,-0.30,-0.00:3.01 1/1:3:-11.27,-0.90,-0.00:9.03 0/1:4:-11.98,-1.21,-3.30:20.92 1/1:2:-7.31,-0.60,-0.00:6.02 1/1:1:-3.67,-0.30,-0.00:3.01 1/1:5:-17.60,-1.51,-0.00:15.04 0/1:5:-7.57,-1.53,-7.86:60.41 1/1:4:-13.86,-1.21,-0.00:12.03 0/0:1:-0.01,-0.31,-2.20:2.98 1/1:4:-14.35,-1.21,-0.00:12.04 0/1:6:-2.67,-1.81,-15.60:8.58 1/1:6:-21.17,-1.81,-0.01:18.05 0/1:4:-3.67,-1.21,-8.61:24.64 1/1:1:-3.76,-0.30,-0.00:3.01 1/1:2:-6.62,-0.60,-0.00:6.01 0/0:1:-0.00,-0.30,-3.10:3.01 1/1:1:-3.57,-0.30,-0.00:3.01 1/1:1:-3.77,-0.30,-0.00:3.01 1/1:2:-6.82,-0.60,-0.00:6.02 1/1:4:-15.55,-1.21,-0.00:12.04 1/1:3:-10.47,-0.91,-0.00:9.02 ./.:-1:0,0,0:-1 1/1:4:-14.25,-1.21,-0.00:12.04 1/1:5:-17.41,-1.51,-0.01:15.04 ./.:-1:0,0,0:-1 1/1:1:-2.87,-0.30,-0.00:3.00 0/1:2:-3.66,-0.60,-3.07:24.66 1/1:2:-6.62,-0.60,-0.00:6.02 1/1:3:-10.18,-0.91,-0.00:9.02 ./.:-1:0,0,0:-1 1/1:2:-7.41,-0.60,-0.00:6.02 ./.:-1:0,0,0:-1 0/1:5:-7.12,-1.51,-8.36:56.09 ./.:-1:0,0,0:-1 1/1:3:-8.50,-0.93,-0.03:8.98 1/1:2:-7.12,-0.60,-0.00:6.02 1/1:2:-6.93,-0.60,-0.00:6.02
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20 66938 . G T 0.01 FDRtranche25.00to35.00+ AB=0.66;AC=4;AF=0.06;AN=98;DB=0;DP=142;Dels=0.00;HRun=5;HaplotypeScore=31.16;MQ=46.41;MQ0=9;OQ=51.02;QD=3.64;SB=-470.88 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:3:-0.00,-0.90,-10.30:9.03 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:2:-0.00,-0.60,-6.81:6.02 ./.:-1:0,0,0:-1 0/0:4:-0.02,-1.21,-11.17:11.94 0/0:5:-0.00,-1.51,-15.62:15.03 0/0:7:-0.01,-2.11,-21.37:21.03 0/0:5:-0.01,-1.51,-15.23:15.02 0/0:1:-0.01,-0.31,-2.16:2.98 0/0:3:-0.00,-0.90,-9.46:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.31,-1.70:2.92 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:3:-0.02,-0.91,-7.92:8.93 0/0:3:-0.01,-0.91,-9.16:8.99 0/0:4:-0.00,-1.21,-12.97:12.03 0/0:3:-0.01,-0.91,-8.77:9.01 0/0:1:-0.01,-0.30,-1.90:2.95 0/1:2:-1.60,-0.63,-2.79:9.69 0/1:3:-3.50,-0.90,-5.56:25.94 1/1:1:-1.49,-0.33,-0.05:2.86 0/0:4:-0.01,-1.21,-12.23:12.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:2:-0.01,-0.61,-4.80:5.95 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:4:-2.76,-3.47,-10.64:7.14 0/0:3:-0.01,-0.91,-9.12:8.97 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.01,-0.61,-4.96:5.99 0/0:2:-0.00,-0.60,-5.76:6.01 0/0:1:-0.01,-0.31,-1.70:2.92 0/0:4:-0.05,-1.24,-10.13:11.85 0/0:4:-0.04,-1.22,-9.56:11.78 0/0:2:-0.00,-0.60,-5.16:6.00 0/0:3:-0.04,-0.92,-6.86:8.78 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:3:-0.01,-0.91,-8.62:9.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:4:-0.00,-1.21,-12.77:12.03 0/0:4:-0.02,-1.22,-10.97:11.97 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:3:-0.00,-0.90,-8.86:9.01
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20 67398 . G C 20.37 0 AB=0.33;AC=1;AF=0.01;AN=98;DB=0;DP=103;Dels=0.00;HRun=1;HaplotypeScore=5.95;MQ=55.95;MQ0=0;OQ=40.21;QD=10.05;SB=-430.00 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:2:-0.00,-0.60,-8.04:6.02 0/0:3:-0.02,-0.92,-10.43:9.02 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:2:-0.00,-0.60,-7.24:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-4.39:3.01 0/0:1:-0.00,-0.30,-3.95:3.01 0/0:4:-0.00,-1.21,-16.82:12.04 0/0:4:-0.01,-1.21,-15.32:12.04 0/0:2:-0.00,-0.60,-7.69:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:5:-0.00,-1.51,-20.32:15.05 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-19.68:15.05 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-15.58:12.04 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:3:-0.02,-0.92,-10.83:9.01 0/0:1:-0.00,-0.30,-3.45:3.01 0/0:3:-0.00,-0.90,-12.43:9.03 0/0:3:-0.00,-0.90,-12.88:9.03 0/0:2:-0.00,-0.60,-8.14:6.02 0/0:4:-0.00,-1.21,-14.59:12.04 0/0:1:-0.00,-0.30,-3.85:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-12.48:9.03 0/0:2:-0.00,-0.60,-7.84:6.02 0/0:3:-0.00,-0.90,-12.53:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-8.34:6.02 0/1:3:-8.49,-0.91,-3.15:22.41 0/0:5:-0.00,-1.51,-20.12:15.05 0/0:2:-0.00,-0.60,-8.14:6.02 0/0:1:-0.00,-0.30,-3.35:3.01 0/0:2:-0.00,-0.60,-7.39:6.02 0/0:2:-0.00,-0.60,-8.04:6.02 0/0:3:-0.00,-0.90,-12.13:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.85:3.01 0/0:1:-0.00,-0.30,-3.45:3.01 0/0:1:-0.00,-0.30,-4.49:3.01 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-18.93:15.05 0/0:5:-0.02,-1.53,-17.88:15.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.85:3.01
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20 67760 . C T 4.59 FDRtranche12.50to25.00 AB=0.60;AC=1;AF=0.01;AN=98;DB=0;DP=122;Dels=0.00;HRun=0;HaplotypeScore=25.67;MQ=57.64;MQ0=0;OQ=23.51;QD=4.70;SB=-447.02 GT:DP:GL:GQ 0/0:6:-0.01,-1.82,-16.62:18.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:1:-0.00,-0.30,-2.90:3.00 0/0:4:-0.01,-1.21,-11.30:12.01 0/0:3:-0.02,-0.91,-8.11:8.95 0/0:3:-0.00,-0.90,-9.91:9.02 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:2:-0.00,-0.61,-5.76:6.00 0/0:3:-0.01,-0.91,-8.16:9.00 0/0:7:-0.01,-2.12,-20.26:21.02 0/0:4:-0.01,-1.21,-10.86:12.00 0/0:1:-0.01,-0.31,-1.87:2.95 0/0:3:-0.00,-0.91,-9.06:9.02 0/0:1:-0.01,-0.31,-2.30:2.99 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:4:-0.01,-1.21,-11.10:12.00 0/0:3:-0.02,-0.92,-7.36:8.96 0/0:2:-0.00,-0.60,-6.24:6.01 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-2.50:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.03,-0.62,-4.86:5.93 0/0:2:-0.01,-0.61,-5.14:5.97 0/0:3:-0.00,-0.91,-8.93:9.02 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:2:-0.00,-0.60,-5.66:6.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:3:-0.00,-0.90,-9.13:9.02 0/0:2:-0.01,-0.61,-4.56:5.97 0/0:1:-0.00,-0.30,-2.37:2.99 0/0:1:-0.00,-0.30,-2.80:3.00 0/1:4:-7.12,-1.21,-5.37:41.56 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:3:-0.01,-0.91,-7.91:8.98 0/0:3:-0.03,-0.92,-7.73:8.93 0/0:3:-0.02,-0.92,-8.03:8.97 0/0:2:-0.00,-0.60,-6.16:6.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.54:5.99 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:1:-0.04,-0.33,-1.60:2.89 0/0:4:-0.00,-1.21,-12.53:12.03
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20 67791 . C G 3.77 FDRtranche12.50to25.00 AB=0.50;AC=1;AF=0.01;AN=98;DB=0;DP=158;Dels=0.00;HRun=0;HaplotypeScore=15.58;MQ=57.58;MQ0=0;OQ=10.80;QD=2.70;SB=-495.23 GT:DP:GL:GQ 0/0:8:-0.02,-2.42,-30.86:24.07 0/0:1:-0.00,-0.30,-3.85:3.01 0/0:4:-0.01,-1.21,-15.02:12.03 0/0:1:-0.00,-0.30,-4.39:3.01 0/0:5:-0.00,-1.51,-19.73:15.05 0/0:4:-0.02,-1.22,-13.13:12.02 0/0:3:-0.01,-0.91,-10.99:9.02 0/0:3:-0.02,-0.92,-10.23:9.02 ./.:-1:0,0,0:-1 0/1:4:-5.89,-1.28,-5.77:44.94 0/0:4:-0.01,-1.21,-15.92:12.04 0/0:2:-0.00,-0.60,-8.34:6.02 0/0:1:-0.00,-0.30,-4.19:3.01 0/0:2:-0.00,-0.60,-7.99:6.02 0/0:5:-0.00,-1.51,-20.03:15.05 0/0:1:-0.00,-0.30,-4.49:3.01 0/0:1:-0.00,-0.30,-3.95:3.01 0/0:4:-0.00,-1.21,-16.52:12.04 0/0:2:-0.00,-0.60,-7.74:6.02 0/0:4:-0.01,-1.21,-14.63:12.03 0/0:3:-0.00,-0.90,-12.23:9.03 0/0:3:-0.00,-0.90,-12.48:9.03 0/0:4:-0.00,-1.21,-15.98:12.04 0/0:6:-0.00,-1.81,-24.32:18.06 0/0:5:-0.00,-1.51,-20.27:15.05 0/0:6:-0.00,-1.81,-23.07:18.06 0/0:1:-0.00,-0.30,-3.25:3.01 0/0:4:-0.00,-1.21,-16.32:12.04 0/0:1:-0.00,-0.30,-3.85:3.01 0/0:5:-0.01,-1.51,-18.73:15.04 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:3:-0.00,-0.91,-11.93:9.03 0/0:3:-0.00,-0.91,-11.23:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.29:6.02 0/0:3:-0.00,-0.91,-11.04:9.03 0/0:2:-0.01,-0.61,-6.94:6.02 0/0:6:-0.01,-1.81,-22.87:18.06 0/0:4:-0.00,-1.21,-14.83:12.04 0/0:6:-0.02,-1.82,-21.67:18.05 0/0:4:-0.00,-1.21,-15.78:12.04 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.52,-17.53:15.04 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-12.23:9.03 0/0:2:-0.00,-0.60,-7.74:6.02 0/0:5:-0.00,-1.51,-19.23:15.05 0/0:3:-0.00,-0.90,-12.48:9.03 0/0:2:-0.00,-0.60,-7.59:6.02
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20 67838 . A C 0.06 FDRtranche25.00to35.00+ AB=0.58;AC=2;AF=0.02;AN=98;DB=0;DP=132;Dels=0.00;HRun=1;HaplotypeScore=17.87;MQ=58.09;MQ0=0;OQ=12.14;QD=2.43;SB=-493.99 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-7.33:6.02 0/0:1:-0.01,-0.30,-1.94:2.96 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:1:-0.00,-0.30,-2.54:3.00 0/0:5:-0.00,-1.51,-16.96:15.04 0/0:2:-0.00,-0.60,-7.13:6.02 0/0:2:-0.00,-0.60,-7.79:6.02 0/0:6:-0.00,-1.81,-21.00:18.05 0/0:5:-0.01,-1.51,-14.61:14.99 0/0:1:-0.00,-0.30,-3.49:3.01 0/0:2:-0.00,-0.60,-7.43:6.02 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:2:-0.01,-0.61,-5.69:6.00 0/0:3:-0.00,-0.90,-10.47:9.03 0/0:4:-0.00,-1.21,-13.77:12.03 0/0:2:-0.00,-0.60,-5.73:5.99 0/0:2:-0.00,-0.60,-6.83:6.02 0/0:3:-0.00,-0.90,-10.33:9.03 0/0:3:-0.00,-0.90,-10.23:9.03 0/0:1:-0.00,-0.30,-3.49:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.67:9.02 0/0:3:-0.00,-0.90,-9.93:9.02 0/0:3:-0.00,-0.90,-8.97:9.01 0/0:2:-0.00,-0.60,-7.13:6.02 0/0:5:-0.00,-1.51,-16.91:15.04 0/0:4:-0.05,-1.24,-11.77:11.88 0/0:2:-0.00,-0.60,-7.09:6.02 0/0:2:-0.01,-0.60,-5.63:5.99 0/0:5:-1.80,-3.08,-14.73:12.78 0/0:2:-0.00,-0.60,-6.83:6.02 0/0:2:-0.00,-0.60,-6.63:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.79:3.01 0/0:2:-0.00,-0.60,-6.23:6.01 0/0:1:-0.00,-0.30,-3.59:3.01 0/0:2:-0.00,-0.60,-5.88:6.01 0/0:7:-0.01,-2.11,-21.80:21.03 0/0:2:-0.00,-0.60,-6.28:6.01 0/1:2:-3.16,-0.60,-3.34:25.55 0/1:3:-3.36,-0.90,-6.99:24.54 0/0:1:-0.00,-0.30,-3.39:3.01 0/0:4:-0.00,-1.21,-13.02:12.03 0/0:3:-0.01,-0.91,-9.13:8.98 0/0:2:-0.00,-0.60,-6.79:6.02 0/0:1:-0.00,-0.30,-3.49:3.01 0/0:1:-0.00,-0.30,-3.19:3.01 0/0:4:-0.00,-1.21,-13.57:12.03 0/0:3:-0.00,-0.90,-10.37:9.03
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20 67950 . C A 0.12 FDRtranche25.00to35.00+ AB=0.73;AC=2;AF=0.02;AN=98;DB=0;DP=164;Dels=0.00;HRun=0;HaplotypeScore=38.00;MQ=58.00;MQ0=0;OQ=13.97;QD=0.93;SB=-478.90 GT:DP:GL:GQ 0/0:1:-0.03,-0.32,-1.66:2.91 0/0:2:-0.00,-0.60,-7.06:6.02 0/0:2:-0.00,-0.60,-6.76:6.02 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:6:-0.05,-1.83,-13.87:17.81 0/0:4:-0.01,-1.21,-11.77:12.01 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-11.62:12.02 0/0:1:-0.00,-0.30,-2.66:3.00 0/0:1:-0.00,-0.30,-3.56:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.76:9.02 0/0:1:-0.01,-0.31,-1.80:2.94 0/0:3:-0.00,-0.91,-9.16:9.02 0/1:3:-2.40,-0.91,-6.42:14.89 0/0:4:-0.00,-1.21,-13.13:12.03 0/0:4:-0.04,-1.23,-10.67:11.91 0/0:1:-0.00,-0.30,-2.46:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.51:6.02 0/0:3:-0.00,-0.91,-9.26:9.01 0/0:4:-0.01,-1.21,-11.77:12.01 0/0:2:-0.00,-0.60,-5.86:6.00 0/0:2:-0.00,-0.60,-6.10:6.01 0/0:4:-0.01,-1.21,-11.22:12.00 0/1:7:-5.82,-2.13,-13.28:36.86 0/0:1:-0.01,-0.31,-1.70:2.92 0/0:3:-0.00,-0.90,-9.57:9.02 0/0:1:-0.03,-0.31,-1.40:2.83 0/0:3:-0.00,-0.90,-9.16:9.02 0/0:3:-0.00,-0.90,-9.87:9.02 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:3:-0.04,-0.92,-7.16:8.79 0/0:2:-0.03,-0.62,-4.01:5.92 0/0:5:-0.01,-1.51,-14.03:15.00 0/0:3:-0.00,-0.90,-10.37:9.03 ./.:-1:0,0,0:-1 0/0:7:-0.01,-2.11,-21.53:21.04 0/0:4:-0.05,-1.23,-10.97:11.87 0/0:3:-0.00,-0.91,-8.82:9.01 0/0:4:-0.01,-1.21,-12.03:12.01 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-14.83:15.03 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:2:-0.00,-0.60,-6.41:6.01 0/0:3:-0.00,-0.91,-9.27:9.02 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:5:-0.00,-1.51,-16.47:15.04 0/0:2:-0.05,-0.63,-4.61:5.85
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20 67955 . G A 0.01 FDRtranche25.00to35.00+ AB=0.55;AC=4;AF=0.05;AN=98;DB=0;DP=163;Dels=0.00;HRun=2;HaplotypeScore=59.71;MQ=57.38;MQ0=0;OQ=18.42;QD=0.74;SB=-432.97 GT:DP:GL:GQ 0/0:1:-0.01,-0.31,-2.20:2.98 0/0:3:-0.02,-0.91,-8.63:8.93 0/0:2:-0.00,-0.60,-6.96:6.02 0/0:1:-0.00,-0.30,-2.67:3.00 0/0:3:-0.02,-0.91,-7.06:8.96 0/0:4:-0.05,-1.23,-9.66:11.82 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-12.56:12.02 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:1:-0.00,-0.30,-2.60:3.00 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.63:9.02 0/1:3:-2.41,-2.18,-5.47:2.30 0/0:1:-0.00,-0.30,-3.27:3.01 0/1:4:-3.67,-1.21,-8.96:24.59 0/0:6:-0.01,-1.81,-19.45:18.04 0/1:3:-1.86,-0.93,-7.12:9.31 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:2:-0.01,-0.61,-5.59:6.00 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:3:-0.05,-0.93,-7.36:8.76 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:3:-0.00,-0.90,-9.03:9.01 0/0:2:-0.00,-0.60,-6.46:6.01 0/0:7:-0.03,-2.12,-19.39:20.94 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:2:-0.01,-0.61,-4.99:5.98 0/0:1:-0.00,-0.30,-3.50:3.01 0/1:3:-4.75,-2.80,-5.01:19.51 0/0:3:-0.00,-0.91,-9.66:9.01 0/0:3:-0.00,-0.90,-10.09:9.02 0/0:4:-0.02,-1.21,-12.56:11.99 0/0:2:-0.00,-0.60,-7.59:6.02 0/0:5:-0.00,-1.51,-17.25:15.04 0/0:3:-0.01,-0.91,-8.26:8.96 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.43:9.02 0/0:3:-0.00,-0.91,-9.49:9.02 0/0:1:-0.00,-0.30,-2.77:3.00 0/0:5:-0.02,-1.52,-14.38:14.97 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.99:9.01 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:3:-0.00,-0.90,-10.69:9.03 0/0:3:-0.01,-0.91,-9.26:8.97 0/0:5:-0.02,-1.51,-14.03:14.99 0/0:3:-0.00,-0.90,-10.29:9.03
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20 68170 . C T 0.74 FDRtranche25.00to35.00+ AB=0.40;AC=2;AF=0.02;AN=98;DB=0;DP=178;Dels=0.00;HRun=0;HaplotypeScore=24.31;MQ=57.58;MQ0=0;OQ=13.19;QD=2.64;SB=-506.46 GT:DP:GL:GQ 0/1:2:-4.07,-0.60,-3.10:24.93 0/0:3:-0.00,-0.90,-9.51:9.02 0/1:2:-2.26,-0.61,-2.91:16.46 0/0:4:-0.01,-1.21,-11.73:12.02 0/0:2:-0.00,-0.60,-6.04:6.01 0/0:2:-0.00,-0.60,-5.94:6.01 0/0:2:-0.00,-0.60,-5.56:6.01 0/0:5:-0.03,-1.52,-12.15:14.96 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:2:-0.00,-0.60,-6.54:6.02 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:2:-0.01,-0.61,-4.96:5.98 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:2:-0.00,-0.60,-6.04:6.01 0/0:5:-0.01,-1.51,-14.50:15.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.34:6.00 0/0:6:-0.02,-1.82,-15.67:17.98 0/0:5:-0.01,-1.51,-14.50:15.02 0/0:4:-0.02,-1.21,-10.97:11.95 0/0:6:-0.01,-1.81,-16.17:18.01 0/0:3:-0.00,-0.91,-8.63:9.01 0/0:2:-0.00,-0.60,-5.84:6.01 0/0:3:-0.00,-0.90,-8.61:9.01 0/0:1:-0.00,-0.30,-2.80:3.00 0/0:3:-0.00,-0.90,-9.46:9.02 0/0:4:-0.01,-1.21,-11.83:12.02 0/0:3:-0.00,-0.91,-8.43:9.01 0/0:4:-0.02,-1.22,-10.73:11.97 0/0:7:-0.03,-2.13,-20.16:20.98 0/0:3:-0.00,-0.91,-8.86:9.01 0/0:2:-0.00,-0.60,-6.24:6.01 0/0:2:-0.00,-0.60,-5.56:6.00 0/0:2:-0.01,-0.61,-5.79:6.00 0/0:9:-0.03,-2.73,-24.50:26.96 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:7:-0.03,-2.13,-18.79:20.97 0/0:5:-0.01,-1.51,-13.57:14.99 0/0:2:-0.00,-0.60,-5.76:6.01 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:6:-0.02,-1.82,-16.17:17.98 0/0:6:-0.01,-1.81,-18.54:18.04 0/0:3:-0.00,-0.91,-8.93:9.02 0/0:4:-0.00,-1.21,-11.87:12.02 0/0:2:-0.00,-0.60,-6.04:6.01 0/0:7:-0.03,-2.12,-19.26:20.94 0/0:6:-0.06,-1.84,-15.67:17.86
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20 68749 rs6086616 T C 1408.72 0 AB=0.45;AC=64;AF=0.70;AN=98;DB=1;DP=196;Dels=0.00;HRun=0;HaplotypeScore=24.82;MQ=57.28;MQ0=0;OQ=4500.28;QD=25.72;SB=-1966.96 GT:DP:GL:GQ 1/1:8:-22.79,-2.42,-0.02:24.01 0/1:3:-2.90,-0.90,-8.01:19.92 1/1:1:-2.40,-0.30,-0.01:2.99 0/1:2:-2.90,-0.60,-3.66:22.93 0/0:5:-0.00,-1.51,-17.51:15.04 0/1:3:-5.69,-0.91,-3.97:30.65 0/1:4:-7.06,-1.22,-3.98:27.61 1/1:4:-12.50,-1.21,-0.00:12.03 1/1:3:-6.73,-0.92,-0.04:8.81 1/1:3:-7.66,-0.92,-0.02:8.96 0/1:4:-2.10,-1.21,-11.70:8.85 1/1:6:-17.39,-1.81,-0.01:18.02 0/0:3:-0.00,-0.90,-11.49:9.03 0/1:4:-6.09,-1.21,-7.81:48.87 0/0:3:-0.00,-0.91,-10.10:9.02 0/0:3:-0.00,-0.90,-11.59:9.03 1/1:3:-8.69,-0.91,-0.01:9.01 1/1:3:-8.73,-0.91,-0.00:9.01 1/1:2:-6.24,-0.60,-0.00:6.01 0/1:2:-2.90,-0.60,-3.46:22.93 1/1:2:-5.39,-0.61,-0.01:6.00 1/1:7:-19.45,-2.12,-0.02:21.02 0/1:3:-6.44,-0.90,-3.76:28.53 1/1:3:-8.76,-0.91,-0.01:9.01 0/1:4:-4.89,-1.22,-7.14:36.78 1/1:4:-11.16,-1.21,-0.01:12.01 1/1:7:-20.39,-2.11,-0.01:21.03 0/1:4:-6.07,-1.21,-7.62:48.59 1/1:1:-2.00,-0.31,-0.01:2.97 0/0:3:-0.01,-0.91,-10.17:9.02 0/1:2:-3.00,-0.60,-3.86:23.93 1/1:1:-2.80,-0.30,-0.00:3.00 1/1:7:-19.05,-2.13,-0.03:20.98 ./.:-1:0,0,0:-1 1/1:3:-9.36,-0.91,-0.00:9.02 1/1:3:-9.36,-0.91,-0.00:9.02 0/0:2:-0.00,-0.61,-6.31:6.01 0/1:7:-13.15,-2.13,-7.65:55.24 1/1:5:-13.85,-1.52,-0.02:15.00 0/1:4:-6.44,-1.21,-6.32:51.14 1/1:9:-24.65,-2.72,-0.03:26.96 1/1:1:-3.07,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.82:6.01 0/1:2:-3.27,-0.60,-3.86:26.66 0/1:5:-2.70,-1.51,-15.06:11.90 1/1:1:-2.90,-0.30,-0.00:3.00 0/1:4:-9.23,-1.21,-3.77:25.64 1/1:10:-28.00,-3.02,-0.02:30.02
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20 69094 rs6039403 G A 2077.82 0 AB=0.52;AC=34;AF=0.40;AN=98;DB=1;DP=135;Dels=0.00;HRun=0;HaplotypeScore=17.87;MQ=58.35;MQ0=0;OQ=1684.43;QD=23.07;SB=-1285.76 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-10.66:9.03 0/0:2:-0.00,-0.60,-7.26:6.02 0/0:1:-0.00,-0.30,-3.60:3.01 ./.:-1:0,0,0:-1 0/1:3:-3.67,-0.90,-6.59:27.64 0/0:1:-0.00,-0.30,-3.80:3.01 1/1:3:-10.29,-0.91,-0.01:9.02 1/1:5:-17.70,-1.51,-0.00:15.04 ./.:-1:0,0,0:-1 1/1:4:-15.43,-1.21,-0.00:12.04 0/0:2:-0.00,-0.60,-7.36:6.02 0/0:2:-0.02,-0.61,-5.36:5.92 0/0:1:-0.00,-0.30,-3.60:3.01 1/1:2:-7.92,-0.60,-0.00:6.02 1/1:1:-4.06,-0.30,-0.00:3.01 0/0:4:-0.00,-1.21,-13.46:12.03 0/1:4:-3.16,-1.21,-9.53:19.52 0/0:6:-0.04,-1.83,-18.08:17.93 0/0:2:-0.00,-0.60,-6.46:6.01 1/1:1:-1.76,-0.33,-0.04:2.93 1/1:2:-7.81,-0.60,-0.00:6.02 0/0:3:-0.00,-0.90,-9.43:9.02 1/1:2:-7.33,-0.60,-0.00:6.02 0/1:3:-6.02,-0.91,-3.60:26.94 1/1:6:-21.48,-1.81,-0.01:18.05 1/1:5:-15.62,-1.52,-0.01:15.03 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:4:-0.00,-1.21,-13.23:12.03 ./.:-1:0,0,0:-1 0/1:3:-3.86,-0.91,-5.76:29.55 0/1:4:-3.86,-1.21,-9.53:26.52 0/0:4:-0.00,-1.21,-13.10:12.03 0/0:2:-0.00,-0.60,-6.56:6.01 0/0:3:-0.01,-0.91,-9.03:9.00 0/1:4:-6.04,-1.21,-6.90:48.24 0/1:4:-7.14,-1.21,-6.59:53.87 1/1:4:-13.93,-1.21,-0.01:12.03 0/0:2:-0.00,-0.60,-6.56:6.01 0/0:6:-0.00,-1.81,-20.02:18.05 0/0:1:-0.00,-0.30,-2.77:3.00 0/1:2:-3.77,-0.60,-3.50:28.94 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.27:3.01 0/1:3:-6.73,-0.91,-3.07:21.65 0/0:1:-0.00,-0.30,-3.07:3.01 1/1:1:-3.76,-0.30,-0.00:3.01 0/1:2:-3.76,-0.60,-3.17:25.66
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20 69408 rs17685809 C T 6737.39 0 AB=0.44;AC=11;AF=0.14;AN=98;DB=1;DP=108;Dels=0.00;HRun=0;HaplotypeScore=6.52;MQ=57.66;MQ0=0;OQ=492.08;QD=18.93;SB=-658.24 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:3:-0.01,-0.91,-8.96:9.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.53:9.01 0/1:3:-8.01,-0.90,-3.47:25.65 0/0:2:-0.00,-0.60,-6.16:6.01 0/1:3:-7.42,-0.91,-3.00:20.92 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.84:6.01 0/0:2:-0.00,-0.60,-6.34:6.01 0/0:1:-0.01,-0.30,-2.40:2.99 0/0:1:-0.00,-0.30,-3.17:3.01 0/1:3:-8.14,-0.90,-2.80:18.92 0/1:3:-4.08,-0.91,-4.89:31.69 0/0:3:-0.01,-0.91,-8.26:9.00 0/0:3:-0.02,-0.92,-8.43:8.95 0/0:3:-0.02,-0.91,-7.69:8.98 0/0:2:-0.01,-0.61,-5.29:6.00 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:2:-0.00,-0.60,-6.04:6.01 0/0:2:-0.00,-0.60,-5.64:6.01 0/0:5:-0.01,-1.51,-15.15:15.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.66:6.01 0/0:2:-0.00,-0.61,-5.49:6.00 0/0:2:-0.00,-0.60,-5.94:6.01 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:3:-0.01,-0.91,-8.26:9.00 0/1:2:-3.97,-0.60,-2.80:21.93 0/1:2:-3.87,-0.60,-2.70:20.92 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.61,-5.59:6.01 0/0:2:-0.00,-0.60,-5.89:6.01 0/1:4:-10.48,-1.21,-3.37:21.65 0/0:2:-0.00,-0.60,-6.44:6.02 0/0:3:-0.01,-0.91,-8.46:9.01 0/0:4:-0.03,-1.22,-9.63:11.89 0/0:3:-0.01,-0.91,-7.79:9.00 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.01,-0.30,-2.07:2.97 0/0:2:-0.01,-0.61,-5.56:6.00 0/0:1:-0.00,-0.30,-2.90:3.00 0/0:1:-0.00,-0.30,-2.87:3.00 0/0:2:-0.01,-0.61,-5.29:6.00 0/0:4:-0.00,-1.21,-12.57:12.03 1/1:1:-3.46,-0.30,-0.00:3.01 1/1:1:-3.27,-0.30,-0.00:3.01
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20 69505 . G A 0.92 FDRtranche25.00to35.00 AB=0.67;AC=3;AF=0.03;AN=98;DB=0;DP=131;Dels=0.00;HRun=0;HaplotypeScore=33.62;MQ=57.20;MQ0=5;OQ=43.61;QD=3.63;SB=-468.61 GT:DP:GL:GQ 0/1:3:-2.16,-0.91,-7.11:12.42 0/0:2:-0.00,-0.60,-7.59:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:3:-0.00,-0.90,-10.36:9.03 0/0:3:-0.00,-0.90,-10.39:9.02 0/1:3:-3.76,-0.90,-6.99:28.53 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.60:3.01 0/1:5:-5.73,-1.52,-8.90:42.14 0/0:1:-0.01,-0.31,-2.10:2.97 0/0:2:-0.00,-0.60,-7.39:6.02 0/0:4:-0.00,-1.21,-13.26:12.03 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:3:-0.05,-0.94,-6.19:8.87 0/0:4:-0.00,-1.21,-13.26:12.03 0/0:3:-0.00,-0.90,-11.69:9.03 0/0:4:-0.01,-1.21,-11.56:12.00 0/0:3:-0.04,-0.93,-6.99:8.90 0/0:2:-0.00,-0.60,-6.96:6.02 0/0:2:-0.00,-0.60,-7.39:6.02 0/0:2:-0.04,-0.63,-5.19:5.90 0/0:4:-0.02,-1.21,-11.96:11.96 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:2:-0.02,-0.61,-5.26:5.90 0/0:3:-0.01,-0.91,-9.29:8.99 0/0:4:-0.00,-1.21,-14.18:12.04 0/0:1:-0.00,-0.30,-3.60:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.79:6.02 0/0:4:-0.00,-1.21,-13.26:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:4:-0.01,-1.21,-12.16:12.02 0/0:2:-0.01,-0.61,-5.36:5.99 0/0:2:-0.00,-0.60,-5.76:6.00 0/0:1:-0.00,-0.30,-3.50:3.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.78:12.03 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:2:-0.00,-0.60,-5.86:6.00 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:2:-0.00,-0.60,-7.06:6.02 0/0:3:-0.00,-0.90,-9.86:9.02 0/0:6:-0.03,-1.82,-17.12:17.95 0/0:3:-0.04,-0.93,-7.99:8.90 0/0:6:-0.01,-1.81,-20.38:18.04
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20 69506 . G C 2.68 FDRtranche12.50to25.00 AB=0.67;AC=4;AF=0.04;AN=98;DB=0;DP=134;Dels=0.00;HRun=0;HaplotypeScore=36.50;MQ=56.72;MQ0=5;OQ=86.58;QD=5.77;SB=-497.82 GT:DP:GL:GQ 0/1:3:-3.10,-0.91,-7.19:21.83 0/0:2:-0.00,-0.60,-8.88:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.99:3.01 0/0:3:-0.00,-0.90,-12.23:9.03 0/0:3:-0.02,-0.92,-10.38:9.02 0/1:3:-2.69,-0.92,-8.20:17.73 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.89:3.01 0/1:4:-7.25,-1.22,-6.89:56.67 0/0:1:-0.00,-0.30,-3.39:3.01 0/1:3:-3.65,-0.91,-7.99:27.43 0/0:4:-0.00,-1.21,-16.12:12.04 0/0:2:-0.00,-0.61,-7.24:6.02 0/0:2:-0.05,-0.65,-5.78:5.99 0/0:4:-0.00,-1.21,-16.12:12.04 0/0:3:-0.00,-0.90,-13.48:9.03 0/0:2:-0.01,-0.61,-7.08:6.02 0/0:3:-0.00,-0.91,-11.88:9.03 0/0:2:-0.01,-0.61,-7.04:6.02 0/0:1:-0.00,-0.30,-4.49:3.01 0/0:2:-0.01,-0.61,-7.48:6.02 0/0:4:-0.03,-1.23,-12.92:12.01 0/0:1:-0.01,-0.31,-3.09:3.01 0/0:2:-0.01,-0.61,-6.44:6.01 0/0:3:-0.04,-0.94,-11.08:9.01 0/0:4:-0.00,-1.21,-16.17:12.04 0/0:1:-0.00,-0.30,-4.09:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-8.08:6.02 0/0:4:-0.03,-1.23,-14.52:12.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.31,-3.29:3.01 0/0:4:-0.02,-1.23,-14.22:12.03 0/0:2:-0.01,-0.61,-6.44:6.01 0/0:1:-0.00,-0.30,-4.09:3.01 0/0:1:-0.01,-0.31,-2.89:3.00 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.52,-18.16:15.05 0/0:1:-0.00,-0.30,-3.59:3.01 0/0:2:-0.00,-0.60,-8.38:6.02 0/0:2:-0.00,-0.60,-7.44:6.02 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:1:-0.00,-0.30,-4.49:3.01 0/0:3:-0.00,-0.91,-11.93:9.03 0/0:6:-0.03,-1.83,-21.36:18.05 0/0:2:-0.00,-0.61,-7.48:6.02 0/0:6:-0.01,-1.81,-24.65:18.06
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20 69536 . G C 0.27 FDRtranche25.00to35.00+ AB=0.76;AC=2;AF=0.03;AN=98;DB=0;DP=131;Dels=0.00;HRun=0;HaplotypeScore=17.71;MQ=54.68;MQ0=3;OQ=30.61;QD=2.19;SB=-443.99 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-4.05:3.01 0/0:4:-0.00,-1.21,-15.92:12.04 0/0:4:-0.02,-1.23,-14.78:12.01 0/0:2:-0.00,-0.61,-7.14:6.02 0/0:2:-0.00,-0.61,-7.14:6.02 0/0:2:-0.00,-0.60,-8.54:6.02 0/0:2:-0.00,-0.60,-8.54:6.02 0/0:2:-0.00,-0.60,-8.68:6.02 0/0:1:-0.02,-0.32,-2.25:2.98 0/0:9:-0.03,-2.73,-30.26:27.07 0/0:3:-0.00,-0.90,-12.63:9.03 0/0:1:-0.00,-0.30,-3.49:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-6.54:6.02 0/0:2:-0.00,-0.60,-8.44:6.02 0/0:2:-0.00,-0.60,-8.14:6.02 0/0:5:-0.01,-1.51,-18.68:15.04 0/0:2:-0.00,-0.60,-7.74:6.02 0/0:1:-0.00,-0.30,-3.25:3.01 0/0:3:-0.01,-0.91,-11.53:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.31,-2.79:3.00 0/0:2:-0.00,-0.61,-7.24:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.79:3.01 0/0:6:-0.01,-1.81,-24.41:18.06 0/0:5:-0.00,-1.51,-19.43:15.05 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:2:-0.00,-0.60,-7.54:6.02 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:2:-0.02,-0.62,-6.34:6.01 0/0:2:-0.00,-0.60,-7.84:6.02 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:2:-0.01,-0.61,-6.84:6.02 0/0:3:-0.04,-0.94,-8.89:8.99 0/0:2:-0.01,-0.61,-6.04:6.01 0/0:3:-0.01,-0.91,-10.04:9.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-12.28:9.03 0/0:1:-0.00,-0.30,-3.55:3.01 0/0:4:-0.01,-1.21,-15.12:12.04 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-8.14:6.02 0/0:2:-0.00,-0.60,-8.08:6.02 0/1:3:-3.65,-0.91,-7.54:27.43 0/0:4:-0.00,-1.21,-16.42:12.04 0/1:5:-3.65,-1.51,-17.07:21.41
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20 70526 . G T 0.01 FDRtranche25.00to35.00+ AB=0.67;AC=6;AF=0.08;AN=98;DB=0;DP=72;Dels=0.00;HRun=4;HaplotypeScore=19.87;MQ=57.09;MQ0=0;OQ=23.00;QD=2.56;SB=-353.99 GT:DP:GL:GQ ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.82:12.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.90:3.00 0/0:1:-0.00,-0.30,-2.80:3.00 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:1:-0.00,-0.30,-3.70:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:2:-0.00,-0.60,-7.31:6.02 0/0:2:-0.00,-0.60,-6.61:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:4:-0.00,-1.21,-13.72:12.03 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.52:9.03 0/0:1:-0.00,-0.30,-3.26:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.50:3.00 0/1:3:-1.51,-0.94,-5.25:5.68 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:3:-0.01,-0.91,-8.42:8.97 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-6.61:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:1:-0.01,-0.30,-2.00:2.97 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.30:3.01 ./.:-1:0,0,0:-1 1/1:2:-3.19,-0.65,-0.07:5.78 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.07:9.03 0/0:1:-0.00,-0.30,-3.16:3.01 1/1:1:-2.09,-0.31,-0.01:2.97 0/0:4:-0.00,-1.21,-12.76:12.03 0/0:2:-0.00,-0.60,-5.40:6.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.10:6.01 ./.:-1:0,0,0:-1 0/1:3:-1.50,-0.93,-6.46:5.62 0/0:1:-0.00,-0.30,-2.90:3.00 0/0:1:-0.00,-0.30,-3.16:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:2:-0.02,-0.61,-4.20:5.92 0/0:1:-0.00,-0.30,-3.46:3.01
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20 70980 rs60263736 G A 707.46 0 AC=2;AF=0.02;AN=98;DB=1;DP=125;Dels=0.00;HRun=0;HaplotypeScore=8.32;MQ=58.29;MQ0=0;OQ=36.15;QD=18.07;SB=-450.00 GT:DP:GL:GQ 0/0:5:-0.00,-1.51,-17.43:15.04 0/0:1:-0.00,-0.30,-3.80:3.01 0/0:1:-0.00,-0.30,-3.37:3.01 0/0:3:-0.00,-0.90,-10.33:9.03 0/0:2:-0.00,-0.60,-6.26:6.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:2:-0.00,-0.61,-5.66:6.00 0/0:3:-0.00,-0.90,-10.16:9.02 0/0:3:-0.00,-0.90,-10.69:9.03 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:3:-0.00,-0.90,-10.59:9.03 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.06:9.03 0/0:5:-0.00,-1.51,-17.03:15.04 0/0:5:-0.01,-1.51,-14.37:15.00 ./.:-1:0,0,0:-1 0/0:8:-0.01,-2.41,-25.19:24.05 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:4:-0.00,-1.21,-13.43:12.03 0/0:4:-0.00,-1.21,-13.23:12.03 0/0:4:-0.00,-1.21,-13.23:12.03 0/0:3:-0.00,-0.90,-10.16:9.03 0/0:7:-0.01,-2.11,-23.22:21.05 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:2:-0.05,-0.63,-5.09:5.87 0/0:2:-0.00,-0.60,-6.04:6.01 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-15.40:15.02 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:2:-3.24,-3.68,-7.29:4.45 0/0:1:-0.00,-0.30,-3.80:3.01 ./.:-1:0,0,0:-1 0/0:5:-0.02,-1.51,-15.20:14.94 0/0:2:-0.00,-0.60,-6.14:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.79:6.02 0/0:1:-0.00,-0.30,-2.77:3.00 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:5:-0.00,-1.51,-15.57:15.03 1/1:2:-7.31,-0.60,-0.00:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:1:-0.00,-0.30,-3.80:3.01 0/0:2:-0.00,-0.60,-7.19:6.02 0/0:4:-0.00,-1.21,-12.86:12.03 0/0:3:-0.00,-0.90,-10.03:9.02 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-7.49:6.02
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20 73036 . C T 0.00 FDRtranche25.00to35.00+ AB=0.62;AC=10;AF=0.12;AN=98;DB=0;DP=144;Dels=0.01;HRun=16;HaplotypeScore=42.70;MQ=50.89;MQ0=9;OQ=149.26;QD=3.39;SB=-451.98 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:3:-0.00,-0.90,-9.03:9.02 0/0:2:-0.00,-0.60,-6.69:6.02 ./.:-1:0,0,0:-1 0/1:6:-5.24,-1.82,-12.04:34.19 0/0:3:-0.00,-0.91,-9.06:9.02 0/0:2:-0.00,-0.60,-6.04:6.01 ./.:-1:0,0,0:-1 0/0:1:-0.02,-0.32,-1.80:2.94 0/1:3:-4.63,-0.94,-3.65:27.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:4:-0.00,-1.21,-14.06:12.04 0/0:4:-0.01,-1.21,-10.76:12.00 0/0:2:-0.04,-0.63,-4.99:5.90 ./.:-1:0,0,0:-1 0/0:4:-0.02,-1.22,-10.63:11.98 0/0:2:-0.00,-0.60,-6.66:6.02 0/1:2:-3.27,-0.60,-3.50:26.64 0/0:4:-0.01,-1.21,-11.43:11.99 0/0:4:-0.03,-1.23,-11.28:11.94 0/1:6:-2.07,-1.53,-12.58:5.45 0/0:4:-0.00,-1.21,-13.78:12.03 0/0:2:-0.00,-0.60,-6.06:6.01 0/1:2:-1.87,-0.63,-3.40:12.36 0/0:1:-0.02,-0.32,-1.80:2.94 0/1:3:-1.87,-0.93,-5.93:9.35 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:1:-0.00,-0.30,-2.47:3.00 0/0:4:-0.02,-1.22,-10.86:11.98 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-9.09:9.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.01,-0.31,-2.30:2.99 0/1:6:-2.30,-1.84,-13.54:4.61 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 1/1:1:-3.07,-0.30,-0.00:3.01 0/0:3:-0.00,-0.90,-9.76:9.02 0/0:5:-0.01,-1.51,-14.44:15.02 0/0:1:-0.00,-0.30,-3.17:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.19:6.01 0/1:2:-3.17,-0.61,-2.50:18.91 0/0:3:-0.02,-0.91,-8.03:8.93
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20 73053 . G T 0.00 FDRtranche25.00to35.00+ AB=0.70;AC=8;AF=0.10;AN=98;DB=0;DP=115;Dels=0.01;HRun=16;HaplotypeScore=22.34;MQ=37.87;MQ0=17;OQ=102.17;QD=3.65;SB=-362.93 GT:DP:GL:GQ 0/0:2:-0.04,-0.62,-4.86:5.79 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/1:5:-3.00,-1.51,-12.73:14.90 0/0:2:-0.00,-0.60,-6.60:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:4:-0.00,-1.21,-13.07:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:2:-0.00,-0.60,-6.46:6.02 0/1:2:-2.60,-0.60,-3.40:19.91 0/1:4:-3.50,-1.21,-10.07:22.91 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:1:-0.00,-0.30,-3.50:3.01 0/1:3:-2.10,-0.61,-3.37:14.85 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:1:-0.00,-0.30,-2.76:3.00 0/0:3:-0.00,-0.90,-9.92:9.02 0/0:3:-0.00,-0.90,-9.72:9.02 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:4:-0.00,-1.21,-12.77:12.03 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.46:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:2:-0.00,-0.60,-6.20:6.01 0/0:2:-0.00,-0.60,-6.01:6.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.73:12.03 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.00,-0.61,-5.91:6.00 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:3:-0.00,-0.90,-9.22:9.02 0/1:3:-2.60,-0.91,-6.46:16.90 0/0:1:-0.00,-0.30,-3.26:3.01 1/1:1:-2.59,-0.30,-0.00:3.00 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-8.82:9.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:4:-0.00,-1.20,-13.16:12.03 0/1:2:-3.50,-0.60,-3.20:25.99
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20 73200 . A G 0.53 FDRtranche25.00to35.00+ AB=0.75;AC=2;AF=0.03;AN=98;DB=0;DP=160;Dels=0.00;HRun=0;HaplotypeScore=14.53;MQ=35.80;MQ0=17;OQ=13.49;QD=2.70;SB=-457.00 GT:DP:GL:GQ 0/0:3:-0.00,-0.91,-10.49:9.03 0/0:3:-0.03,-0.93,-9.59:8.98 0/0:3:-0.01,-0.92,-9.99:9.01 0/0:3:-0.02,-0.92,-9.77:8.98 0/0:2:-0.01,-0.61,-5.92:6.01 1/1:1:-3.27,-0.30,-0.00:3.01 0/0:4:-0.04,-1.24,-11.75:11.97 0/0:5:-0.00,-1.51,-18.60:15.05 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-14.75:12.04 0/0:4:-0.00,-1.21,-14.05:12.03 0/0:3:-0.00,-0.90,-10.88:9.03 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-15.16:12.04 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:2:-0.00,-0.60,-7.13:6.02 0/0:6:-0.02,-1.83,-19.49:18.02 0/0:2:-0.01,-0.61,-5.82:6.00 0/0:1:-0.00,-0.30,-2.96:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.32:6.02 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:6:-0.01,-1.81,-20.98:18.05 0/0:3:-0.00,-0.90,-11.17:9.03 0/0:4:-0.01,-1.21,-14.36:12.03 0/0:5:-0.01,-1.52,-16.50:15.03 0/0:2:-0.00,-0.60,-7.21:6.02 0/0:2:-0.00,-0.60,-7.92:6.02 0/0:2:-0.00,-0.60,-8.02:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.02,-0.92,-9.78:9.00 0/0:2:-0.00,-0.60,-7.61:6.02 0/0:2:-0.00,-0.60,-7.11:6.02 0/0:3:-0.01,-0.91,-9.58:9.01 0/0:1:-0.01,-0.31,-2.37:2.99 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:5:-0.00,-1.51,-19.18:15.05 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:4:-0.00,-1.21,-14.57:12.04 0/0:4:-0.00,-1.21,-14.52:12.04 0/0:6:-0.05,-1.85,-19.17:17.97
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20 73857 . G A 21.56 0 AB=0.40;AC=1;AF=0.01;AN=98;DB=0;DP=153;Dels=0.00;HRun=0;HaplotypeScore=20.25;MQ=42.81;MQ0=17;OQ=32.73;QD=6.55;SB=-420.00 GT:DP:GL:GQ 0/0:5:-0.01,-1.51,-14.23:15.01 0/0:3:-0.00,-0.90,-8.81:9.01 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-5.39:6.00 0/0:3:-0.00,-0.91,-8.73:9.01 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:3:-0.00,-0.91,-9.03:9.02 0/0:8:-0.02,-2.42,-21.36:23.98 0/0:2:-0.01,-0.61,-5.46:5.99 0/0:8:-0.05,-2.44,-20.99:23.92 0/0:4:-0.01,-1.21,-11.73:12.02 0/0:5:-0.01,-1.51,-14.35:15.01 0/0:1:-0.00,-0.30,-3.40:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.56:6.01 0/0:2:-0.00,-0.60,-5.46:6.00 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:4:-0.03,-1.22,-9.28:11.95 0/0:1:-0.00,-0.30,-2.80:3.00 0/0:2:-0.02,-0.62,-4.19:5.95 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/1:3:-7.73,-0.90,-3.40:24.93 0/0:1:-0.00,-0.30,-2.80:3.00 0/0:4:-0.02,-1.22,-10.18:11.97 0/0:3:-0.02,-0.92,-7.46:8.97 0/0:2:-0.00,-0.61,-5.59:6.01 0/0:1:-0.00,-0.30,-2.87:3.00 0/0:3:-0.01,-0.91,-8.16:8.99 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.19:9.00 0/0:4:-0.01,-1.21,-11.86:12.02 0/0:5:-0.02,-1.52,-14.05:15.00 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:3:-0.01,-0.91,-7.89:9.00 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-7.69:8.99 0/0:2:-0.00,-0.60,-6.14:6.01 0/0:3:-0.01,-0.91,-7.89:9.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.66:6.01 0/0:1:-0.00,-0.30,-2.60:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:1:-0.00,-0.30,-2.97:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.76:6.01 0/0:3:-0.02,-0.92,-7.66:8.96
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20 73862 . G A 3.38 FDRtranche12.50to25.00 AB=0.60;AC=1;AF=0.01;AN=98;DB=0;DP=158;Dels=0.00;HRun=1;HaplotypeScore=21.38;MQ=45.42;MQ0=13;OQ=26.56;QD=5.31;SB=-488.66 GT:DP:GL:GQ 0/1:5:-7.73,-1.51,-8.26:62.19 0/0:2:-0.00,-0.60,-6.24:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.04,-0.63,-3.69:5.88 0/0:4:-0.02,-1.22,-10.53:11.98 0/0:1:-0.00,-0.30,-2.90:3.00 0/0:3:-0.01,-0.91,-7.93:8.97 0/0:9:-0.02,-2.72,-24.65:26.99 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:9:-0.02,-2.72,-24.98:27.01 0/0:2:-0.00,-0.60,-5.89:6.01 0/0:3:-0.01,-0.91,-8.16:9.01 0/0:1:-0.00,-0.30,-2.80:3.00 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.83:9.01 0/0:2:-0.01,-0.61,-4.99:5.99 0/0:1:-0.00,-0.30,-3.37:3.01 0/0:5:-0.02,-1.52,-13.48:14.99 0/0:2:-0.00,-0.61,-5.59:6.01 0/0:2:-0.01,-0.61,-5.09:5.99 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.16:12.02 0/0:3:-0.01,-0.91,-7.79:8.99 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:5:-0.03,-1.52,-13.45:14.96 0/0:3:-0.01,-0.91,-8.43:9.00 0/0:2:-0.00,-0.61,-5.49:6.00 0/0:2:-0.00,-0.60,-6.24:6.01 0/0:3:-0.05,-0.94,-7.46:8.87 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-5.69:6.01 0/0:4:-0.01,-1.21,-10.86:12.00 0/0:5:-0.04,-1.53,-12.55:14.91 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:3:-0.01,-0.91,-8.39:9.01 ./.:-1:0,0,0:-1 0/0:4:-0.02,-1.21,-10.28:11.99 0/0:2:-0.00,-0.60,-5.94:6.01 0/0:3:-0.02,-0.91,-7.49:8.98 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:1:-0.01,-0.31,-2.30:2.99 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.70:12.03 0/0:2:-0.01,-0.61,-5.26:6.00 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.66:9.01 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:4:-0.01,-1.21,-11.73:12.02
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20 74347 rs6135141 G A 144000.00 0 AB=0.53;AC=24;AF=0.24;AN=98;DB=1;DP=203;Dels=0.00;HRun=0;HaplotypeScore=14.28;MQ=58.52;MQ0=0;OQ=1172.34;QD=18.32;SB=-1048.89 GT:DP:GL:GQ 0/1:3:-3.97,-0.90,-7.09:30.64 1/1:1:-4.17,-0.30,-0.00:3.01 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:2:-0.00,-0.60,-6.46:6.01 1/1:8:-26.79,-2.43,-0.03:24.02 0/0:4:-0.00,-1.20,-13.50:12.03 1/1:1:-4.06,-0.30,-0.00:3.01 0/1:4:-10.69,-1.21,-3.30:20.92 0/0:4:-0.00,-1.21,-12.90:12.03 0/1:9:-7.43,-2.72,-22.62:47.16 0/0:6:-0.00,-1.81,-20.92:18.05 0/0:1:-0.00,-0.30,-2.27:2.99 1/1:1:-2.16,-0.31,-0.01:2.98 0/1:6:-3.87,-1.81,-15.93:20.63 0/1:2:-3.76,-0.61,-2.40:17.90 0/0:10:-0.02,-3.02,-30.15:30.02 1/1:1:-3.47,-0.30,-0.00:3.01 0/0:5:-0.04,-1.53,-14.28:14.94 0/0:1:-0.00,-0.30,-2.87:3.00 0/0:6:-0.01,-1.81,-18.35:18.03 0/0:3:-0.00,-0.90,-9.13:9.02 0/0:4:-0.01,-1.21,-12.08:12.02 1/1:4:-14.55,-1.21,-0.00:12.04 0/0:4:-0.00,-1.21,-13.33:12.03 0/1:6:-18.80,-1.81,-3.27:14.62 0/0:5:-0.00,-1.51,-16.13:15.04 0/0:5:-0.03,-1.52,-14.13:14.96 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.02,-0.61,-4.99:5.97 0/0:4:-0.00,-1.21,-13.56:12.03 0/0:1:-0.01,-0.31,-1.97:2.96 0/1:3:-3.77,-0.90,-6.64:28.64 0/1:2:-3.76,-0.60,-3.27:26.66 0/0:2:-0.00,-0.60,-7.19:6.02 0/0:5:-0.00,-1.51,-16.07:15.04 0/1:6:-9.88,-1.82,-10.10:80.63 1/1:1:-3.67,-0.30,-0.00:3.01 0/0:5:-0.01,-1.51,-15.13:15.02 0/1:4:-10.70,-1.21,-3.40:21.92 0/0:4:-0.03,-1.23,-11.18:11.93 0/0:4:-0.03,-1.22,-11.20:11.94 0/0:4:-0.00,-1.21,-12.50:12.03 0/0:1:-0.00,-0.30,-3.40:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:6:-3.05,-4.69,-18.17:16.44 0/0:4:-0.01,-1.21,-11.37:12.01 0/0:10:-0.01,-3.01,-31.31:30.07 0/0:6:-0.00,-1.81,-19.57:18.05
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20 74412 . C A 1.78 FDRtranche25.00to35.00 AB=0.50;AC=3;AF=0.03;AN=98;DB=0;DP=142;Dels=0.00;HRun=0;HaplotypeScore=11.78;MQ=58.18;MQ0=0;OQ=10.08;QD=3.36;SB=-486.95 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:2:-0.00,-0.60,-7.01:6.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-7.21:6.02 0/0:2:-0.00,-0.60,-6.30:6.01 0/0:3:-0.00,-0.90,-10.02:9.02 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:3:-0.00,-0.90,-9.60:9.02 0/0:4:-0.00,-1.21,-13.02:12.02 1/1:1:-1.94,-0.30,-0.01:2.96 ./.:-1:0,0,0:-1 0/0:6:-0.06,-1.83,-16.49:17.75 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.40:6.01 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:2:-0.00,-0.60,-5.70:6.00 0/0:3:-0.00,-0.90,-10.17:9.03 0/0:3:-0.05,-0.92,-7.30:8.73 0/0:2:-0.00,-0.60,-6.01:6.01 0/0:6:-0.01,-1.81,-18.57:18.02 0/0:3:-0.00,-0.90,-9.62:9.02 0/0:9:-0.01,-2.71,-28.43:27.06 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:3:-0.00,-0.91,-9.32:9.01 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:5:-0.02,-1.52,-15.13:14.98 0/0:6:-0.01,-1.81,-18.46:18.04 0/0:7:-0.02,-2.11,-20.57:20.98 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:2:-0.00,-0.60,-6.40:6.02 0/0:3:-0.00,-0.90,-9.92:9.02 0/0:2:-0.00,-0.60,-5.76:5.99 0/0:1:-0.00,-0.30,-3.46:3.01 0/1:2:-3.44,-0.60,-3.20:25.99 0/0:2:-0.01,-0.60,-5.00:5.98 0/0:3:-0.00,-0.90,-9.56:9.02 0/0:1:-0.01,-0.31,-2.16:2.98 0/0:4:-0.01,-1.21,-11.26:12.01 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:2:-0.00,-0.60,-5.20:6.00 0/0:3:-0.03,-0.91,-7.30:8.84 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:2:-0.00,-0.60,-6.70:6.02 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:2:-0.01,-0.61,-4.90:5.95 0/0:3:-0.00,-0.90,-9.62:9.02 0/0:5:-0.00,-1.51,-16.47:15.04 0/0:6:-0.00,-1.81,-19.89:18.05
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20 74503 . C T 0.48 FDRtranche25.00to35.00+ AB=0.60;AC=1;AF=0.01;AN=98;DB=0;DP=138;Dels=0.00;HRun=1;HaplotypeScore=12.93;MQ=58.04;MQ0=0;OQ=19.69;QD=3.94;SB=-467.00 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-2.77:3.00 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:5:-0.01,-1.51,-14.70:15.01 0/0:3:-0.02,-0.92,-8.19:8.96 0/0:3:-0.00,-0.90,-10.33:9.02 0/0:2:-0.00,-0.60,-6.69:6.02 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:2:-0.00,-0.61,-5.86:6.00 0/0:6:-0.06,-1.85,-15.75:17.85 0/0:1:-0.00,-0.30,-2.67:3.00 0/0:3:-0.02,-0.92,-7.46:8.95 0/0:2:-0.00,-0.60,-6.69:6.02 0/0:4:-0.01,-1.21,-12.36:12.01 0/0:3:-0.00,-0.90,-9.53:9.01 0/0:3:-0.01,-0.91,-8.56:9.00 0/0:1:-0.01,-0.31,-2.20:2.98 0/0:4:-0.01,-1.21,-12.16:12.02 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:4:-0.04,-1.23,-11.33:11.92 0/0:1:-0.04,-0.33,-1.60:2.89 0/0:3:-0.00,-0.91,-8.63:9.01 0/0:3:-0.02,-0.92,-6.93:8.94 0/0:4:-0.01,-1.21,-12.36:12.02 0/0:5:-0.01,-1.51,-14.30:15.00 0/0:1:-0.02,-0.31,-1.90:2.95 0/0:5:-0.00,-1.51,-16.03:15.03 0/0:4:-0.00,-1.21,-13.78:12.03 0/0:2:-0.00,-0.60,-6.46:6.01 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:5:-0.03,-1.53,-14.53:14.95 0/0:3:-0.00,-0.90,-9.76:9.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.89:6.02 0/0:4:-0.00,-1.21,-12.36:12.02 0/0:2:-0.00,-0.60,-6.39:6.01 0/0:3:-0.00,-0.90,-9.43:9.02 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-2.87:3.00 0/0:3:-0.00,-0.90,-9.66:9.02 0/0:4:-0.00,-1.21,-13.03:12.03 0/1:5:-7.04,-1.51,-9.56:55.28 0/0:3:-0.05,-0.93,-8.19:8.88 0/0:4:-0.00,-1.21,-14.08:12.04
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20 74664 . G A 0.02 FDRtranche25.00to35.00+ AB=0.67;AC=3;AF=0.03;AN=98;DB=0;DP=115;Dels=0.00;HRun=2;HaplotypeScore=5.91;MQ=57.33;MQ0=0;OQ=13.32;QD=3.33;SB=-427.00 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:3:-0.01,-0.91,-9.33:9.00 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:2:-0.00,-0.60,-7.19:6.02 0/0:2:-0.00,-0.60,-6.46:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.83:9.02 0/0:2:-0.00,-0.60,-6.29:6.01 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:2:-0.03,-0.62,-5.19:5.93 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.39:9.00 0/0:3:-0.00,-0.90,-9.21:9.02 0/0:7:-0.01,-2.11,-22.03:21.05 0/0:2:-0.00,-0.60,-6.76:6.02 0/0:4:-0.04,-1.23,-10.50:11.91 0/0:2:-0.01,-0.61,-5.16:5.97 0/0:2:-0.00,-0.60,-6.44:6.02 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:4:-0.00,-1.21,-12.53:12.03 0/0:3:-0.00,-0.91,-8.73:9.01 0/0:4:-0.01,-1.21,-11.40:12.01 0/0:4:-0.00,-1.21,-13.03:12.03 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:4:-2.44,-3.49,-11.93:10.45 0/0:3:-0.04,-0.92,-8.36:8.83 0/0:3:-0.00,-0.90,-9.53:9.02 0/1:3:-2.16,-0.91,-6.88:12.42 0/0:1:-0.00,-0.30,-2.87:3.00 0/0:3:-0.00,-0.90,-9.91:9.02 0/0:1:-0.00,-0.30,-3.50:3.01 1/1:1:-3.86,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.50:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.19:6.01 0/0:3:-0.00,-0.90,-9.11:9.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:1:-0.00,-0.30,-2.97:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.19:9.03 0/0:5:-0.00,-1.51,-15.57:15.03 0/0:4:-0.00,-1.21,-12.73:12.03 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1
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20 74775 . G T 0.03 FDRtranche25.00to35.00+ AB=0.61;AC=3;AF=0.03;AN=98;DB=0;DP=126;Dels=0.00;HRun=2;HaplotypeScore=6.57;MQ=55.72;MQ0=0;OQ=24.45;QD=2.72;SB=-477.00 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.41:6.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.01,-0.60,-5.46:5.98 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:3:-0.00,-0.91,-9.02:9.02 0/0:1:-0.00,-0.30,-2.60:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.20:6.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:3:-0.00,-0.90,-8.80:9.01 0/0:1:-0.01,-0.30,-2.00:2.97 0/1:5:-3.01,-1.51,-10.50:14.96 0/0:2:-0.00,-0.60,-5.81:6.01 0/1:2:-2.40,-0.61,-3.26:17.89 0/0:1:-0.01,-0.31,-1.80:2.94 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:3:-0.01,-0.90,-8.10:9.00 0/0:2:-0.03,-0.61,-4.66:5.84 0/0:4:-0.01,-1.21,-11.87:12.01 0/0:2:-0.00,-0.60,-6.10:6.01 0/0:3:-0.02,-0.91,-7.86:8.93 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.00,-0.60,-6.01:6.01 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:4:-0.00,-1.21,-11.76:12.02 0/0:4:-0.00,-1.21,-12.36:12.03 0/0:3:-0.00,-0.90,-9.72:9.02 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:4:-0.04,-1.22,-9.12:11.77 0/0:3:-0.05,-0.92,-6.90:8.72 0/0:4:-0.01,-1.21,-10.36:11.95 0/0:2:-0.00,-0.60,-5.66:6.00 0/0:3:-0.00,-0.90,-9.22:9.02 0/0:3:-0.05,-0.92,-7.10:8.73 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:4:-0.03,-1.21,-10.20:11.88 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:3:-0.00,-0.91,-8.46:9.01 0/0:5:-0.01,-1.51,-14.72:15.02 0/0:2:-0.01,-0.60,-5.10:5.97 0/1:2:-3.73,-0.62,-1.30:6.86 0/0:2:-0.00,-0.60,-6.41:6.02
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20 75106 . G T 0.18 FDRtranche25.00to35.00+ AB=0.53;AC=4;AF=0.04;AN=98;DB=0;DP=221;Dels=0.00;HRun=0;HaplotypeScore=37.73;MQ=51.33;MQ0=11;OQ=37.39;QD=2.67;SB=-488.27 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.00:6.01 0/1:2:-3.44,-0.60,-2.80:21.98 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:4:-0.00,-1.21,-12.56:12.03 0/0:8:-0.05,-2.44,-21.73:23.90 0/0:5:-0.00,-1.51,-16.92:15.04 0/0:2:-0.00,-0.60,-7.01:6.02 0/0:10:-0.01,-3.02,-29.28:30.02 ./.:-1:0,0,0:-1 0/0:7:-0.00,-2.11,-23.69:21.06 0/0:3:-0.00,-0.90,-9.70:9.02 0/0:4:-0.00,-1.21,-12.56:12.03 0/0:2:-0.00,-0.60,-6.10:6.01 0/0:5:-0.01,-1.51,-15.02:15.02 0/0:3:-0.01,-0.91,-8.36:8.99 0/0:3:-0.00,-0.90,-9.12:9.02 0/0:3:-0.00,-0.90,-9.70:9.02 0/0:3:-0.00,-0.90,-9.36:9.02 0/0:6:-0.02,-1.81,-17.46:17.93 0/0:3:-0.00,-0.90,-9.72:9.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/1:5:-2.29,-1.52,-11.08:7.62 0/0:5:-0.00,-1.51,-16.16:15.04 0/0:3:-0.00,-0.90,-8.60:9.01 0/0:4:-0.00,-1.21,-12.42:12.03 0/0:3:-0.01,-0.91,-7.90:8.98 0/0:5:-0.01,-1.51,-14.83:15.02 0/0:3:-0.00,-0.90,-8.96:9.01 0/0:3:-0.00,-0.90,-9.70:9.02 0/1:2:-3.34,-0.60,-2.90:22.98 0/0:3:-0.00,-0.90,-9.20:9.02 0/0:3:-0.00,-0.90,-9.92:9.02 0/0:1:-0.00,-0.30,-3.20:3.01 0/1:2:-2.04,-0.61,-3.31:14.34 0/0:8:-0.01,-2.41,-25.47:24.06 0/0:5:-0.05,-1.52,-13.26:14.74 0/0:3:-0.00,-0.90,-9.06:9.02 0/0:7:-0.00,-2.11,-21.56:21.05 0/0:6:-0.02,-1.81,-16.06:17.94 0/0:10:-0.01,-3.02,-29.88:30.03 0/0:1:-0.03,-0.31,-1.40:2.83 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:3:-0.00,-0.90,-8.96:9.00 0/0:2:-0.00,-0.60,-6.40:6.02 0/0:4:-0.01,-1.21,-11.82:12.01 0/0:4:-0.00,-1.20,-13.46:12.03 0/0:6:-0.00,-1.81,-18.77:18.04 0/0:2:-0.00,-0.60,-6.76:6.02
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20 75254 rs892665 C A 185.74 0 AB=0.53;AC=34;AF=0.37;AN=98;DB=1;DP=229;Dels=0.00;HRun=1;HaplotypeScore=33.05;MQ=54.82;MQ0=1;OQ=2161.86;QD=16.13;SB=-1552.67 GT:DP:GL:GQ 0/1:5:-2.44,-1.51,-11.86:9.36 0/1:5:-14.37,-1.51,-3.30:17.96 0/1:3:-3.00,-0.91,-6.12:20.92 0/1:3:-1.93,-0.93,-4.48:10.03 0/0:7:-0.03,-2.12,-18.33:20.89 0/1:5:-5.77,-1.52,-7.82:42.48 0/0:1:-0.01,-0.31,-2.26:2.99 0/0:7:-0.02,-2.11,-19.06:20.95 0/0:3:-0.00,-0.91,-9.07:9.01 0/0:5:-0.02,-1.51,-13.62:14.95 1/1:3:-9.53,-0.91,-0.00:9.02 0/1:5:-2.78,-1.53,-9.23:12.46 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-6.70:6.02 0/0:3:-0.00,-0.90,-9.42:9.02 1/1:2:-6.53,-0.60,-0.00:6.02 0/0:2:-0.00,-0.60,-6.70:6.02 1/1:3:-10.27,-0.90,-0.00:9.03 0/0:3:-0.00,-0.91,-8.96:9.02 0/1:2:-3.54,-0.60,-3.20:25.99 0/0:2:-0.00,-0.60,-6.70:6.02 0/1:2:-3.40,-0.60,-3.16:25.55 0/0:6:-0.01,-1.81,-18.16:18.03 0/0:3:-0.02,-0.91,-7.90:8.88 0/1:7:-10.03,-2.11,-12.57:79.22 1/1:6:-19.50,-1.81,-0.00:18.04 1/1:5:-14.05,-1.51,-0.01:14.97 0/1:5:-12.57,-1.51,-3.31:17.99 0/1:4:-6.74,-1.21,-5.90:46.97 0/0:4:-0.01,-1.21,-11.26:11.99 0/0:3:-0.02,-0.91,-6.92:8.96 0/0:6:-0.03,-1.82,-16.67:17.95 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:6:-0.01,-1.81,-18.79:18.04 0/0:4:-0.00,-1.21,-12.30:12.03 0/0:7:-0.01,-2.11,-21.83:21.05 0/1:6:-9.64,-1.81,-8.26:64.50 0/1:4:-3.30,-1.21,-9.06:20.92 1/1:8:-19.33,-2.45,-0.08:23.78 0/0:3:-0.01,-0.91,-8.26:8.98 0/0:3:-0.00,-0.90,-9.12:9.02 0/1:6:-3.16,-1.82,-13.46:13.48 1/1:3:-10.83,-0.90,-0.00:9.03 1/1:3:-7.17,-0.92,-0.03:8.86 0/1:4:-8.12,-1.21,-3.11:19.01 1/1:5:-16.96,-1.51,-0.00:15.04 0/0:5:-0.00,-1.51,-15.82:15.04 0/1:14:-23.07,-4.23,-19.98:99.00
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20 76190 . C T 0.00 FDRtranche25.00to35.00+ AB=0.62;AC=4;AF=0.04;AN=98;DB=0;DP=167;Dels=0.00;HRun=10;HaplotypeScore=23.96;MQ=52.23;MQ0=2;OQ=13.26;QD=1.66;SB=-480.94 GT:DP:GL:GQ 0/0:2:-0.01,-0.61,-5.56:5.98 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:3:-0.00,-0.90,-10.56:9.03 0/0:3:-0.01,-0.91,-8.26:8.99 0/0:3:-0.00,-0.90,-10.23:9.03 0/0:5:-0.00,-1.51,-17.55:15.04 0/0:5:-0.01,-1.51,-16.35:15.01 0/0:4:-0.01,-1.21,-11.53:12.01 0/1:3:-1.86,-0.93,-6.79:9.31 1/1:1:-2.06,-0.31,-0.02:2.97 0/0:7:-0.01,-2.11,-23.17:21.04 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.47:3.00 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:1:-0.00,-0.30,-2.57:3.00 0/0:3:-0.00,-0.90,-10.56:9.03 0/0:6:-0.01,-1.81,-18.99:18.04 0/0:4:-0.00,-1.21,-12.10:12.02 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:4:-0.01,-1.21,-11.43:11.97 0/0:5:-0.01,-1.51,-15.75:15.03 0/0:8:-0.01,-2.41,-26.39:24.05 0/0:5:-0.00,-1.51,-17.68:15.05 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:3:-0.00,-0.90,-9.86:9.02 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:4:-0.04,-1.22,-11.33:11.84 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:4:-0.00,-1.21,-13.13:12.03 0/0:2:-0.03,-0.62,-4.76:5.86 0/0:3:-0.00,-0.90,-10.09:9.02 0/0:5:-0.01,-1.51,-15.93:15.00 0/0:4:-0.01,-1.21,-12.73:12.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-6.46:6.01 0/0:4:-0.02,-1.21,-11.86:11.94 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:5:-0.00,-1.51,-17.38:15.04 0/1:3:-3.16,-0.90,-6.89:22.52 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.96:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.02,-0.31,-1.67:2.91 0/0:7:-0.00,-2.11,-23.95:21.06 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:2:-0.00,-0.60,-7.19:6.02 0/0:6:-0.00,-1.81,-20.07:18.05
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20 76193 . G T 0.01 FDRtranche25.00to35.00+ AB=0.72;AC=4;AF=0.04;AN=98;DB=0;DP=168;Dels=0.00;HRun=2;HaplotypeScore=27.46;MQ=51.72;MQ0=2;OQ=13.80;QD=0.92;SB=-464.98 GT:DP:GL:GQ 0/0:3:-0.05,-0.92,-6.62:8.72 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:3:-0.00,-0.90,-10.22:9.03 0/0:4:-0.00,-1.21,-12.42:12.03 0/0:4:-0.01,-1.21,-11.56:12.01 0/0:3:-0.00,-0.90,-9.92:9.02 0/0:5:-0.00,-1.51,-16.33:15.04 0/0:3:-0.01,-0.91,-8.52:8.97 0/0:2:-0.00,-0.60,-6.26:6.01 1/1:1:-2.69,-0.30,-0.00:3.00 0/0:6:-0.01,-1.81,-18.64:18.04 0/0:1:-0.00,-0.30,-2.90:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:3:-0.00,-0.90,-9.52:9.02 0/1:8:-3.52,-2.42,-19.03:11.02 0/1:4:-2.70,-1.21,-9.56:14.90 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:4:-0.05,-1.22,-9.42:11.75 0/0:4:-0.03,-1.21,-10.57:11.89 0/0:7:-0.00,-2.11,-22.79:21.05 0/0:5:-0.00,-1.51,-15.89:15.04 0/0:2:-0.00,-0.60,-6.21:6.01 0/0:2:-0.00,-0.60,-6.11:6.01 0/0:2:-0.00,-0.60,-6.41:6.01 0/0:2:-0.03,-0.61,-4.56:5.84 0/0:3:-0.00,-0.90,-9.72:9.02 0/0:2:-0.00,-0.60,-6.51:6.02 0/0:3:-0.01,-0.91,-8.62:8.99 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-9.27:9.02 0/0:3:-0.00,-0.90,-10.07:9.03 0/0:3:-0.00,-0.90,-9.72:9.02 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.00,-0.60,-5.46:6.00 0/0:3:-0.00,-0.90,-9.37:9.02 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:4:-0.01,-1.21,-11.93:12.01 0/0:3:-0.04,-0.92,-7.72:8.80 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-11.27:12.01 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:1:-0.01,-0.31,-1.70:2.92 0/0:5:-0.02,-1.51,-14.33:14.93 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:4:-0.03,-1.22,-11.12:11.85
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20 77981 . G T 0.00 FDRtranche25.00to35.00+ AB=0.66;AC=13;AF=0.16;AN=98;DB=0;DP=109;Dels=0.01;HRun=15;HaplotypeScore=19.99;MQ=40.83;MQ0=9;OQ=171.44;QD=5.36;SB=-367.05 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.56:6.02 0/1:3:-3.00,-0.91,-5.92:20.92 0/0:1:-0.01,-0.30,-2.10:2.98 0/0:2:-0.00,-0.60,-5.86:6.00 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:1:-0.00,-0.30,-3.86:3.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.62:12.02 0/1:5:-1.80,-1.52,-11.84:2.77 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-7.06:6.02 0/0:2:-0.02,-0.61,-4.30:5.92 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:1:-0.00,-0.30,-3.10:3.01 1/1:1:-1.99,-0.31,-0.01:2.97 0/1:2:-2.10,-0.61,-3.21:14.86 0/0:4:-0.02,-1.21,-11.72:11.95 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:3:-0.00,-0.90,-9.90:9.02 1/1:1:-3.39,-0.30,-0.00:3.01 0/0:3:-0.00,-0.90,-9.96:9.02 0/0:3:-0.01,-0.91,-8.57:9.00 0/1:2:-1.80,-0.62,-3.48:11.78 0/1:3:-3.10,-0.90,-6.26:21.92 0/1:5:-2.50,-1.21,-10.18:12.88 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.16:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:3:-0.00,-0.90,-10.07:9.02 0/0:2:-0.00,-0.60,-6.41:6.02 0/1:4:-3.74,-1.23,-7.72:25.08 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:4:-0.01,-1.21,-10.37:11.99 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.70:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.40:6.01 1/1:2:-5.09,-0.61,-0.01:5.99 0/0:1:-0.00,-0.30,-2.60:3.00
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20 79123 . C T 69.60 HARD_TO_VALIDATE;InDel AB=0.71;AC=4;AF=0.05;AN=98;DB=0;DP=127;Dels=0.00;HRun=10;HaplotypeScore=31.87;MQ=29.25;MQ0=21;QD=4.35;SB=-409.63 GT:DP:GL:GQ 0/1:3:-3.36,-0.90,-6.69:24.52 0/0:2:-0.01,-0.60,-5.34:5.99 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:2:-0.00,-0.60,-6.99:6.02 0/1:2:-3.06,-0.60,-3.40:24.52 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:1:-0.00,-0.30,-3.37:3.01 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:2:-0.00,-0.60,-5.99:6.01 0/0:4:-0.00,-1.21,-12.60:12.02 0/0:2:-0.00,-0.60,-6.64:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/1:2:-4.07,-0.60,-2.37:17.65 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.46:9.02 0/0:1:-0.00,-0.30,-3.80:3.01 0/0:2:-0.01,-0.60,-5.04:5.99 0/0:2:-0.00,-0.60,-6.04:6.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:3:-0.00,-0.90,-10.26:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.04:6.01 0/0:2:-0.00,-0.60,-6.66:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:1:-0.00,-0.30,-2.87:3.00 0/0:1:-0.00,-0.30,-2.57:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.29:6.02 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:2:-0.01,-0.61,-4.74:5.98 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.16:6.01 0/1:2:-3.26,-0.60,-3.40:26.53 0/0:1:-0.00,-0.30,-3.50:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.77:3.00 0/0:1:-0.00,-0.30,-3.30:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.07:3.01 ./.:-1:0,0,0:-1
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20 79126 . G T 0.15 FDRtranche25.00to35.00+ AB=0.63;AC=7;AF=0.09;AN=98;DB=0;DP=123;Dels=0.00;HRun=2;HaplotypeScore=21.28;MQ=29.54;MQ0=21;OQ=62.85;QD=3.14;SB=-371.94 GT:DP:GL:GQ 0/1:5:-3.10,-1.51,-13.27:15.90 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:3:-0.00,-0.90,-8.96:9.01 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:4:-0.00,-1.21,-12.76:12.02 0/0:2:-0.00,-0.60,-6.50:6.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.46:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:2:-0.00,-0.60,-6.96:6.02 0/0:2:-0.01,-0.60,-5.00:5.97 0/0:1:-0.00,-0.30,-3.30:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.04,-0.31,-1.30:2.78 0/0:1:-0.00,-0.30,-3.16:3.01 0/1:3:-2.90,-0.91,-6.52:19.91 ./.:-1:0,0,0:-1 0/1:3:-2.30,-0.91,-6.01:13.88 0/1:2:-2.30,-0.61,-3.26:16.88 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.31:6.01 0/0:1:-0.01,-0.31,-1.80:2.94 1/1:1:-2.29,-0.31,-0.01:2.99 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:1:-0.00,-0.30,-3.16:3.01 0/1:2:-2.10,-0.61,-2.41:14.87 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:1:-0.00,-0.30,-3.16:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1
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20 79234 rs6045990 T C 144000.00 0 AB=0.53;AC=31;AF=0.47;AN=98;DB=1;DP=111;Dels=0.00;HRun=0;HaplotypeScore=17.39;MQ=34.24;MQ0=17;OQ=967.17;QD=15.11;SB=-640.32 GT:DP:GL:GQ 0/0:4:-0.00,-1.21,-15.06:12.04 0/1:4:-7.49,-1.21,-7.53:62.88 0/1:2:-3.60,-0.60,-3.46:28.53 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:4:-0.00,-1.21,-14.85:12.04 1/1:2:-6.76,-0.60,-0.00:6.02 0/0:1:-0.00,-0.30,-3.67:3.01 0/1:3:-5.89,-0.91,-4.06:31.54 ./.:-1:0,0,0:-1 0/1:7:-10.64,-2.15,-12.86:84.89 1/1:4:-14.16,-1.21,-0.00:12.04 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:1:-2.40,-0.30,-0.01:2.99 0/1:2:-3.57,-0.60,-3.97:29.66 1/1:1:-2.90,-0.30,-0.00:3.00 ./.:-1:0,0,0:-1 1/1:2:-6.99,-0.60,-0.00:6.02 0/0:4:-0.00,-1.21,-15.07:12.04 1/1:1:-2.87,-0.30,-0.00:3.00 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:2:-0.00,-0.60,-7.42:6.02 0/1:3:-3.37,-0.90,-7.62:24.65 0/0:1:-0.00,-0.30,-3.97:3.01 ./.:-1:0,0,0:-1 1/1:1:-3.50,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:2:-0.00,-0.60,-7.51:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.73:6.02 ./.:-1:0,0,0:-1 0/1:5:-10.90,-1.52,-3.99:24.73 ./.:-1:0,0,0:-1 1/1:1:-3.50,-0.30,-0.00:3.01 0/1:4:-2.67,-1.21,-11.18:14.64 0/0:2:-0.00,-0.60,-6.93:6.02 1/1:3:-8.23,-0.91,-0.02:8.91 ./.:-1:0,0,0:-1 1/1:1:-3.50,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.67:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:1:-3.50,-0.30,-0.00:3.01 0/1:3:-2.47,-0.91,-7.54:15.64 ./.:-1:0,0,0:-1
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20 79239 . G T 0.00 FDRtranche25.00to35.00+ AB=0.78;AC=5;AF=0.07;AN=98;DB=0;DP=120;Dels=0.00;HRun=8;HaplotypeScore=49.27;MQ=31.95;MQ0=24;OQ=26.56;QD=1.66;SB=-337.99 GT:DP:GL:GQ 0/0:4:-0.00,-1.21,-12.77:12.03 0/0:5:-0.00,-1.51,-16.79:15.04 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:4:-0.00,-1.21,-12.72:12.03 0/0:3:-0.01,-0.91,-7.66:8.98 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:3:-0.00,-0.90,-10.42:9.03 ./.:-1:0,0,0:-1 0/0:8:-0.01,-2.41,-25.84:24.05 0/0:3:-0.00,-0.90,-10.42:9.03 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:1:-0.01,-0.30,-2.10:2.98 0/0:2:-0.03,-0.62,-4.06:5.92 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.61,-5.41:6.00 0/0:4:-0.00,-1.21,-12.43:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.66:3.00 0/0:2:-0.01,-0.61,-5.46:5.99 0/0:2:-0.00,-0.60,-6.41:6.02 0/0:1:-0.00,-0.30,-3.36:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.90:3.00 0/0:2:-0.00,-0.60,-5.80:6.01 1/1:1:-2.69,-0.30,-0.00:3.00 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:1:-0.00,-0.30,-3.20:3.01 0/1:4:-3.41,-1.21,-7.62:21.98 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:3:-0.00,-0.90,-8.56:9.01 0/0:2:-0.01,-0.61,-5.51:6.00 0/1:3:-1.70,-0.92,-5.89:7.74 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.16:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:1:-0.00,-0.30,-3.46:3.01 0/1:2:-1.60,-0.63,-3.49:9.69 ./.:-1:0,0,0:-1
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20 79761 . C A 0.00 FDRtranche25.00to35.00+ AB=0.89;AC=5;AF=0.07;AN=98;DB=0;DP=142;Dels=0.00;HRun=3;HaplotypeScore=13.09;MQ=24.68;MQ0=52;OQ=25.33;QD=1.95;SB=-343.24 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-6.91:6.02 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:3:-0.00,-0.90,-9.22:9.02 0/0:4:-0.01,-1.21,-12.32:12.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.00:12.02 ./.:-1:0,0,0:-1 0/0:7:-1.60,-2.13,-18.41:5.32 0/0:2:-0.00,-0.60,-5.96:6.00 ./.:-1:0,0,0:-1 0/0:1:-0.03,-0.31,-1.40:2.83 0/0:1:-0.01,-0.30,-2.00:2.97 0/0:2:-0.00,-0.60,-6.91:6.02 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-6.11:6.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:1:-0.02,-0.31,-1.60:2.90 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.00,-0.60,-5.81:6.01 1/1:1:-2.29,-0.31,-0.01:2.99 0/0:2:-0.00,-0.60,-6.01:6.01 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.26:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.26:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.11:6.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.96:3.01 1/1:1:-1.99,-0.31,-0.01:2.97 0/1:3:-3.10,-0.90,-6.82:21.91
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20 80071 rs6046657 G A 6859.12 0 AB=0.56;AC=39;AF=0.49;AN=98;DB=1;DP=139;Dels=0.00;HRun=0;HaplotypeScore=14.08;MQ=36.42;MQ0=15;OQ=1697.61;QD=20.96;SB=-1066.33 GT:DP:GL:GQ 0/1:4:-11.38,-1.21,-2.97:17.64 0/1:3:-7.72,-0.90,-3.80:28.93 0/0:1:-0.00,-0.30,-3.17:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.56:6.01 1/1:1:-3.16,-0.30,-0.00:3.01 0/0:4:-0.01,-1.21,-11.93:11.99 0/0:4:-0.00,-1.21,-13.26:12.03 ./.:-1:0,0,0:-1 0/1:3:-3.77,-0.91,-5.67:28.65 1/1:2:-7.91,-0.60,-0.00:6.02 0/0:4:-0.00,-1.21,-12.40:12.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.07:3.01 1/1:3:-10.89,-0.90,-0.00:9.03 0/0:4:-0.00,-1.20,-14.53:12.04 1/1:2:-7.62,-0.60,-0.00:6.02 0/0:5:-0.01,-1.51,-15.83:15.02 1/1:2:-7.23,-0.60,-0.00:6.02 0/1:3:-3.47,-0.91,-5.14:25.66 0/1:4:-7.32,-1.21,-6.79:55.88 0/1:3:-3.67,-0.90,-6.57:27.64 ./.:-1:0,0,0:-1 1/1:4:-15.06,-1.21,-0.00:12.04 1/1:1:-3.66,-0.30,-0.00:3.01 1/1:4:-14.67,-1.21,-0.00:12.04 0/1:2:-3.66,-0.60,-3.07:24.66 0/1:3:-3.66,-0.90,-5.74:27.54 1/1:1:-3.57,-0.30,-0.00:3.01 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:3:-0.01,-0.91,-8.86:9.01 0/1:2:-3.87,-0.60,-3.50:28.94 0/0:4:-0.00,-1.21,-13.26:12.03 0/1:4:-10.79,-1.21,-2.97:17.64 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:2:-0.00,-0.60,-6.99:6.02 0/1:2:-3.66,-0.60,-3.00:23.93 1/1:2:-6.92,-0.60,-0.00:6.02 0/0:4:-0.00,-1.21,-13.56:12.03 0/1:2:-2.17,-0.62,-3.61:15.50 1/1:1:-3.67,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 1/1:3:-10.88,-0.90,-0.00:9.03 0/1:2:-3.67,-0.60,-2.87:22.66 1/1:1:-3.57,-0.30,-0.00:3.01 0/0:2:-0.00,-0.60,-6.46:6.01 ./.:-1:0,0,0:-1
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20 80269 . T C 0.56 FDRtranche25.00to35.00+ AB=0.55;AC=2;AF=0.03;AN=98;DB=0;DP=136;Dels=0.00;HRun=0;HaplotypeScore=12.96;MQ=56.16;MQ0=0;OQ=18.39;QD=2.30;SB=-480.98 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:2:-0.01,-0.61,-5.72:6.00 0/0:3:-0.00,-0.90,-11.19:9.03 0/0:3:-0.00,-0.90,-11.58:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.31:6.02 0/0:5:-0.00,-1.51,-18.99:15.05 0/0:4:-0.05,-1.24,-12.53:11.96 0/0:3:-0.00,-0.90,-11.37:9.03 0/0:2:-0.01,-0.61,-6.42:6.01 0/0:1:-0.01,-0.31,-2.27:2.99 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:2:-0.00,-0.60,-7.31:6.02 0/0:4:-0.00,-1.21,-14.92:12.04 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-15.43:12.04 0/0:2:-0.00,-0.60,-7.01:6.02 0/0:3:-0.00,-0.90,-11.08:9.03 0/0:1:-0.00,-0.30,-3.66:3.01 0/1:2:-3.07,-0.60,-3.76:24.66 0/0:5:-0.00,-1.51,-18.30:15.05 0/0:3:-0.00,-0.90,-10.88:9.03 0/0:5:-0.00,-1.51,-18.68:15.05 0/0:3:-0.00,-0.90,-11.38:9.03 0/0:4:-0.00,-1.21,-15.35:12.04 0/0:2:-0.00,-0.60,-7.73:6.02 0/0:4:-0.00,-1.21,-14.73:12.04 0/0:4:-0.00,-1.21,-14.63:12.04 0/0:5:-0.00,-1.51,-19.31:15.05 0/0:2:-0.00,-0.60,-7.31:6.02 0/0:3:-0.05,-0.94,-9.17:8.92 0/0:2:-0.00,-0.60,-8.33:6.02 0/0:5:-0.00,-1.51,-17.69:15.04 0/0:1:-0.00,-0.30,-4.06:3.01 0/0:2:-0.00,-0.61,-6.42:6.01 0/0:1:-0.00,-0.30,-3.76:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:3:-0.01,-0.92,-9.58:9.00 0/0:4:-0.00,-1.21,-13.93:12.03 0/0:1:-0.00,-0.30,-3.96:3.01 0/0:2:-0.00,-0.60,-7.42:6.02 0/0:2:-0.00,-0.60,-7.42:6.02 0/0:2:-0.00,-0.60,-7.41:6.02 0/0:2:-0.00,-0.60,-7.42:6.02 0/1:3:-2.77,-0.91,-6.84:18.65 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:1:-0.01,-0.31,-2.36:2.99 0/0:3:-0.00,-0.90,-10.78:9.03
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20 80304 . T G 0.11 FDRtranche25.00to35.00+ AB=0.55;AC=13;AF=0.14;AN=98;DB=0;DP=136;Dels=0.00;HRun=1;HaplotypeScore=74.37;MQ=55.43;MQ0=0;OQ=115.16;QD=2.62;SB=-402.37 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.08:6.01 0/1:6:-3.21,-1.83,-12.11:13.79 0/1:2:-1.40,-0.61,-3.07:7.89 0/0:2:-0.02,-0.62,-4.93:5.94 0/0:1:-0.00,-0.30,-3.39:3.01 1/1:2:-3.90,-0.61,-0.02:5.89 0/0:2:-0.01,-0.61,-4.83:5.98 0/1:4:-3.50,-1.22,-5.93:22.81 0/0:1:-0.00,-0.30,-3.24:3.01 0/0:2:-0.01,-0.61,-4.58:5.97 0/0:1:-0.00,-0.30,-2.74:3.00 0/0:3:-0.05,-0.93,-7.87:8.87 0/1:2:-2.50,-0.60,-2.94:18.98 ./.:-1:0,0,0:-1 0/1:4:-1.60,-1.21,-9.69:3.91 0/0:3:-0.00,-0.90,-9.87:9.02 0/0:2:-0.01,-0.61,-5.23:5.99 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.31,-2.29:2.99 0/0:4:-0.01,-1.21,-11.51:12.02 0/0:2:-0.00,-0.60,-6.23:6.01 0/1:4:-1.51,-1.22,-9.41:2.90 1/1:1:-1.60,-0.31,-0.02:2.90 0/0:1:-0.01,-0.30,-2.14:2.98 0/1:3:-2.20,-0.91,-6.44:12.96 0/0:1:-0.00,-0.30,-3.14:3.01 0/0:1:-0.00,-0.30,-3.14:3.01 0/0:3:-0.03,-0.91,-7.02:8.87 0/0:1:-0.00,-0.30,-2.59:3.00 0/0:3:-0.00,-0.90,-9.62:9.02 0/0:3:-0.00,-0.90,-8.97:9.02 0/0:2:-0.00,-0.60,-6.83:6.02 0/0:3:-0.02,-0.91,-7.47:8.97 0/0:4:-0.01,-1.21,-12.51:12.00 0/0:2:-0.00,-0.60,-5.83:6.01 0/0:2:-0.00,-0.60,-5.48:6.00 0/0:2:-0.00,-0.60,-6.43:6.01 0/0:2:-0.01,-0.60,-5.38:5.99 0/0:2:-0.01,-0.61,-5.03:5.98 0/0:2:-0.01,-0.60,-5.38:5.99 0/0:2:-0.04,-0.63,-3.79:5.87 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-5.13:5.99 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.33:9.00 0/1:4:-1.61,-1.21,-8.09:3.95 0/1:4:-2.90,-1.22,-5.98:16.80
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20 80305 . A G 0.21 FDRtranche25.00to35.00+ AB=0.53;AC=13;AF=0.15;AN=98;DB=0;DP=125;Dels=0.00;HRun=1;HaplotypeScore=58.36;MQ=55.01;MQ0=0;OQ=143.13;QD=4.47;SB=-400.73 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-7.81:6.02 0/1:5:-1.60,-1.53,-15.96:0.67 0/1:2:-2.50,-0.61,-3.86:18.91 0/0:2:-0.00,-0.60,-7.12:6.02 0/0:1:-0.00,-0.30,-3.27:3.01 1/1:1:-1.50,-0.33,-0.05:2.86 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:1:-0.00,-0.30,-3.96:3.01 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:1:-0.00,-0.30,-3.46:3.01 0/1:3:-2.70,-0.91,-7.81:17.91 0/0:1:-0.00,-0.30,-3.76:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.18:9.03 0/0:4:-1.96,-3.04,-12.73:10.81 0/1:2:-2.00,-0.61,-3.97:13.85 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.27:9.03 0/0:2:-0.01,-0.61,-5.92:6.00 0/0:3:-0.03,-0.93,-8.30:8.98 0/0:1:-1.64,-1.71,-1.79:0.71 0/0:1:-0.00,-0.30,-2.76:3.00 0/1:4:-4.10,-1.23,-6.75:28.71 0/1:2:-3.70,-0.60,-3.86:30.94 0/1:2:-1.50,-0.63,-3.90:8.64 0/0:4:-0.01,-1.21,-12.42:12.02 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:3:-0.01,-0.91,-9.97:9.02 0/0:3:-0.00,-0.90,-11.28:9.03 0/0:2:-0.03,-0.63,-5.92:5.97 0/0:3:-0.00,-0.91,-10.48:9.02 0/0:4:-0.00,-1.21,-14.43:12.03 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:2:-0.00,-0.60,-7.21:6.02 0/0:2:-0.00,-0.60,-6.82:6.02 0/0:2:-0.00,-0.60,-7.81:6.02 0/1:2:-1.50,-0.63,-3.60:8.64 0/0:2:-0.00,-0.60,-7.51:6.02 1/1:1:-3.10,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.22:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:4:-0.02,-1.22,-12.06:12.01 0/0:3:-0.00,-0.91,-10.18:9.02 0/1:3:-2.00,-0.91,-7.54:10.84
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20 80655 rs2196239 A G 731.36 0 AB=0.45;AC=82;AF=0.96;AN=98;DB=1;DP=171;Dels=0.00;HRun=0;HaplotypeScore=16.27;MQ=57.49;MQ0=0;OQ=5434.04;QD=32.54;SB=-2534.02 GT:DP:GL:GQ 1/1:4:-13.46,-1.21,-0.00:12.03 ./.:-1:0,0,0:-1 1/1:2:-5.96,-0.60,-0.00:6.01 1/1:4:-12.80,-1.21,-0.00:12.03 1/1:2:-5.84,-0.60,-0.00:6.01 1/1:2:-6.74,-0.60,-0.00:6.02 1/1:2:-6.66,-0.60,-0.00:6.02 1/1:5:-14.97,-1.51,-0.01:15.02 1/1:3:-9.93,-0.90,-0.00:9.02 1/1:6:-18.07,-1.82,-0.02:17.93 1/1:6:-17.84,-1.81,-0.01:18.03 1/1:4:-12.13,-1.21,-0.01:12.01 1/1:1:-3.17,-0.30,-0.00:3.01 1/1:2:-7.49,-0.60,-0.00:6.02 1/1:5:-13.93,-1.53,-0.05:14.78 1/1:4:-12.80,-1.21,-0.00:12.03 ./.:-1:0,0,0:-1 1/1:8:-26.51,-2.41,-0.00:24.06 0/0:2:-0.00,-0.60,-7.42:6.02 1/1:3:-8.83,-0.91,-0.01:9.00 1/1:2:-6.56,-0.60,-0.00:6.02 0/1:5:-8.91,-1.51,-6.94:54.29 1/1:5:-16.10,-1.51,-0.00:15.03 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:1:-3.17,-0.30,-0.00:3.01 1/1:2:-7.09,-0.60,-0.00:6.02 1/1:2:-6.79,-0.60,-0.00:6.02 1/1:4:-12.30,-1.21,-0.00:12.02 1/1:5:-13.95,-1.52,-0.03:14.96 1/1:1:-3.50,-0.30,-0.00:3.01 1/1:1:-3.07,-0.30,-0.00:3.01 1/1:5:-15.84,-1.51,-0.00:15.04 0/1:4:-3.27,-1.20,-12.09:20.64 1/1:7:-22.92,-2.11,-0.01:21.04 1/1:3:-9.31,-0.90,-0.00:9.02 1/1:3:-9.43,-0.90,-0.00:9.02 1/1:5:-15.60,-1.51,-0.00:15.03 1/1:9:-27.43,-2.71,-0.01:27.04 1/1:4:-13.03,-1.21,-0.00:12.03 1/1:4:-12.70,-1.21,-0.00:12.03 ./.:-1:0,0,0:-1 1/1:4:-10.17,-1.21,-0.01:11.96 1/1:2:-6.04,-0.60,-0.00:6.01 ./.:-1:0,0,0:-1 1/1:2:-6.04,-0.60,-0.00:6.01 1/1:5:-15.90,-1.51,-0.00:15.04 1/1:3:-9.51,-0.90,-0.00:9.02 1/1:4:-13.23,-1.21,-0.00:12.03
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20 80728 . C G 583.87 0 AB=0.25;AC=1;AF=0.01;AN=98;DB=0;DP=124;Dels=0.00;HRun=0;HaplotypeScore=7.87;MQ=58.58;MQ0=0;OQ=79.66;QD=19.92;SB=-462.45 GT:DP:GL:GQ 0/0:3:-0.00,-0.91,-11.83:9.03 0/0:2:-0.00,-0.60,-8.74:6.02 0/0:3:-0.00,-0.90,-12.73:9.03 0/1:4:-12.73,-1.21,-4.29:30.88 0/0:1:-0.00,-0.30,-3.95:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-12.59:9.03 0/0:2:-0.00,-0.60,-8.88:6.02 0/0:2:-0.00,-0.60,-8.24:6.02 0/0:2:-0.00,-0.60,-8.88:6.02 0/0:2:-0.00,-0.60,-7.64:6.02 0/0:3:-0.00,-0.91,-11.53:9.03 0/0:2:-0.00,-0.60,-7.89:6.02 0/0:1:-0.00,-0.30,-4.49:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-12.53:9.03 0/0:4:-0.00,-1.21,-15.48:12.04 0/0:2:-0.00,-0.60,-7.84:6.02 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:1:-0.00,-0.30,-3.95:3.01 0/0:6:-0.01,-1.81,-23.66:18.06 0/0:3:-0.00,-0.90,-12.98:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.59:6.02 0/0:2:-0.01,-0.61,-6.84:6.01 0/0:2:-0.00,-0.60,-7.64:6.02 0/0:2:-0.00,-0.60,-7.84:6.02 0/0:2:-0.00,-0.60,-8.68:6.02 0/0:2:-0.00,-0.60,-7.88:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-12.53:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-4.39:3.01 0/0:4:-0.01,-1.22,-15.62:12.03 0/0:2:-0.00,-0.60,-8.04:6.02 0/0:3:-0.00,-0.90,-12.03:9.03 0/0:5:-0.00,-1.51,-20.17:15.05 0/0:4:-0.00,-1.21,-15.58:12.04 0/0:5:-0.01,-1.51,-17.93:15.04 0/0:6:-0.00,-1.81,-24.26:18.06 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-14.93:12.04 0/0:2:-0.00,-0.60,-8.14:6.02 0/0:1:-0.00,-0.30,-4.19:3.01 0/0:2:-0.01,-0.61,-6.59:6.01 0/0:7:-0.00,-2.11,-29.06:21.07 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-7.38:6.02
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20 80755 . G T 0.08 FDRtranche25.00to35.00+ AB=0.68;AC=4;AF=0.04;AN=98;DB=0;DP=135;Dels=0.00;HRun=0;HaplotypeScore=10.78;MQ=58.13;MQ0=0;OQ=10.64;QD=1.33;SB=-466.29 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:3:-0.00,-0.90,-9.76:9.02 0/0:2:-0.00,-0.60,-7.06:6.02 0/0:2:-0.00,-0.60,-6.20:6.01 0/0:4:-0.00,-1.21,-12.86:12.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.46:6.01 0/1:4:-1.74,-1.21,-9.27:5.31 0/0:3:-0.00,-0.90,-9.72:9.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:5:-0.00,-1.51,-15.37:15.03 ./.:-1:0,0,0:-1 0/0:1:-0.03,-0.32,-1.66:2.91 0/0:2:-0.00,-0.60,-6.51:6.01 0/0:4:-0.01,-1.21,-11.72:12.01 0/1:3:-3.20,-0.90,-7.02:22.91 0/0:5:-0.01,-1.51,-13.97:14.98 0/0:1:-0.00,-0.30,-3.20:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:5:-0.03,-1.53,-13.99:14.93 0/0:3:-0.05,-0.93,-8.07:8.86 0/0:7:-0.03,-2.12,-19.69:20.96 0/0:3:-0.01,-0.91,-8.06:8.97 0/0:2:-0.01,-0.61,-4.96:5.99 0/0:6:-0.03,-1.82,-16.02:17.87 0/0:2:-0.00,-0.60,-5.81:6.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:3:-0.02,-0.92,-8.32:8.96 0/0:2:-0.00,-0.60,-6.50:6.02 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:3:-0.00,-0.90,-8.30:9.00 0/0:3:-0.00,-0.90,-9.52:9.02 0/0:3:-0.01,-0.91,-8.87:9.01 0/0:2:-0.00,-0.60,-5.80:6.01 1/1:1:-2.09,-0.31,-0.01:2.97 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:4:-0.00,-1.21,-12.63:12.03 0/0:3:-0.02,-0.92,-7.42:8.95 0/0:2:-0.00,-0.60,-5.91:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.76:6.01 0/0:2:-0.01,-0.60,-5.46:5.98 0/0:2:-0.01,-0.61,-5.10:5.96 0/0:3:-0.00,-0.90,-8.40:9.01 0/0:1:-0.00,-0.30,-3.36:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.07:9.03
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20 81666 . C T 62.21 0 AB=1.00;AC=3;AF=0.03;AN=98;DB=0;DP=84;Dels=0.00;HRun=1;HaplotypeScore=5.13;MQ=58.96;MQ0=0;OQ=112.08;QD=16.01;SB=-508.32 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-9.83:9.02 0/0:1:-0.00,-0.30,-3.57:3.01 0/0:2:-0.00,-0.60,-6.96:6.02 0/0:4:-0.00,-1.21,-13.53:12.03 0/0:1:-0.00,-0.30,-3.37:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.90:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.37:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:3:-0.00,-0.90,-10.96:9.03 0/0:1:-0.01,-0.31,-2.30:2.99 0/0:3:-0.00,-0.90,-8.71:9.01 0/0:2:-0.00,-0.60,-6.76:6.01 1/1:4:-14.75,-1.21,-0.00:12.04 0/0:3:-0.00,-0.91,-8.61:9.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.80:3.01 0/0:2:-0.00,-0.60,-6.89:6.02 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:2:-1.24,-1.68,-4.79:4.44 0/1:3:-2.29,-2.07,-7.97:2.23 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:3:-0.00,-0.90,-10.13:9.02 0/0:3:-0.02,-0.91,-8.96:8.93 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-2.67:3.00 0/0:1:-0.00,-0.30,-3.80:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:3:-0.00,-0.90,-10.16:9.03 0/0:4:-0.00,-1.21,-12.80:12.03 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:6:-0.00,-1.81,-19.72:18.04 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.09:9.03 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:1:-0.00,-0.30,-2.67:3.00
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20 81801 . G A 0.09 FDRtranche25.00to35.00+ AB=0.50;AC=3;AF=0.03;AN=98;DB=0;DP=117;Dels=0.00;HRun=4;HaplotypeScore=5.22;MQ=56.23;MQ0=0;OQ=33.09;QD=8.27;SB=-427.00 GT:DP:GL:GQ 1/1:1:-3.96,-0.30,-0.00:3.01 0/0:3:-0.00,-0.90,-10.03:9.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.79:9.01 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:1:-0.00,-0.30,-3.80:3.01 0/0:2:-0.01,-0.61,-4.46:5.97 0/0:1:-0.00,-0.30,-3.57:3.01 0/0:3:-0.00,-0.90,-10.79:9.03 0/0:2:-0.00,-0.60,-6.94:6.02 0/0:2:-0.01,-0.61,-5.46:5.98 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:3:-0.00,-0.90,-10.33:9.03 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:6:-0.03,-1.82,-16.69:17.97 0/0:3:-0.00,-0.90,-9.53:9.02 0/0:3:-0.00,-0.90,-9.76:9.02 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:2:-0.01,-0.61,-5.49:5.98 0/0:6:-0.03,-1.83,-16.49:17.95 0/0:3:-0.02,-0.91,-7.66:8.97 0/0:3:-0.00,-0.90,-9.01:9.02 0/0:3:-0.00,-0.90,-9.83:9.02 0/0:3:-0.02,-0.92,-8.69:8.97 0/0:2:-0.00,-0.60,-6.34:6.01 0/1:2:-3.76,-0.60,-3.00:23.93 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:3:-0.01,-0.91,-8.66:9.01 ./.:-1:0,0,0:-1 0/0:4:-1.25,-2.29,-10.56:10.45 0/0:5:-0.01,-1.51,-15.35:15.02 0/0:3:-0.00,-0.90,-9.53:9.02 0/0:3:-0.00,-0.90,-9.31:9.02 0/0:2:-0.04,-0.63,-5.09:5.90 0/0:3:-0.01,-0.91,-8.43:9.00 0/0:5:-0.02,-1.52,-14.90:14.98 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.50:3.00 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.27:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.60,-5.34:5.99 0/0:2:-0.00,-0.60,-6.66:6.02
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20 81979 rs1836445 T C 52.05 0 AB=0.61;AC=7;AF=0.19;AN=98;DB=1;DP=111;Dels=0.00;HRun=0;HaplotypeScore=17.07;MQ=20.60;MQ0=39;OQ=199.85;QD=9.52;SB=-340.61 GT:DP:GL:GQ ./.:-1:0,0,0:-1 0/1:2:-3.57,-0.60,-3.97:29.66 ./.:-1:0,0,0:-1 0/0:1:-0.02,-0.32,-1.96:2.96 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:1:-0.00,-0.30,-3.67:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.53:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.56:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.02:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.04,-0.33,-1.87:2.95 0/0:1:-0.00,-0.30,-3.57:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.13:6.02 0/0:3:-0.00,-0.90,-11.19:9.03 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.61:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/1:2:-2.27,-0.60,-3.77:16.64 1/1:2:-5.59,-0.61,-0.00:6.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-4.07:3.01 0/0:1:-0.01,-0.31,-2.57:3.00 0/0:1:-0.00,-0.30,-3.77:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.02,-0.92,-9.50:9.00 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:2:-0.01,-0.61,-6.42:6.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:1:-2.80,-0.30,-0.00:3.00 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-17.09:15.04 0/1:6:-5.47,-1.81,-13.23:36.57
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20 82012 rs34365171 T C 0.02 FDRtranche25.00to35.00+ AC=4;AF=0.11;AN=98;DB=1;DP=94;Dels=0.00;HRun=1;HaplotypeScore=12.27;MQ=16.00;MQ0=56;OQ=16.95;QD=3.39;SB=-210.86 GT:DP:GL:GQ ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.61:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:1:-3.37,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 1/1:1:-2.10,-0.31,-0.01:2.97 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.77:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.63:6.02 0/0:2:-0.01,-0.61,-6.33:6.00 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.77:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.43:6.02 0/0:3:-0.00,-0.90,-11.30:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:1:-0.00,-0.30,-4.07:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.77:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.97:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:1:-0.00,-0.30,-3.87:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.23:6.02 0/0:1:-0.00,-0.30,-3.57:3.01 ./.:-1:0,0,0:-1
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20 82079 rs34120808 G A 39.80 0 AB=0.70;AC=6;AF=0.09;AN=98;DB=1;DP=122;Dels=0.00;HRun=0;HaplotypeScore=22.71;MQ=26.98;MQ0=29;OQ=108.56;QD=9.05;SB=-379.06 GT:DP:GL:GQ 0/0:2:-0.00,-0.61,-5.59:6.01 0/0:2:-0.01,-0.61,-5.54:5.97 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:2:-0.00,-0.60,-5.76:6.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.17:3.01 1/1:1:-3.97,-0.30,-0.00:3.01 0/0:1:-0.00,-0.30,-3.10:3.01 1/1:2:-6.11,-0.61,-0.00:6.01 0/1:4:-3.37,-1.21,-8.03:21.65 0/0:2:-0.01,-0.60,-5.34:5.99 ./.:-1:0,0,0:-1 0/1:2:-3.27,-0.60,-3.27:26.64 0/0:1:-0.00,-0.30,-2.80:3.00 0/0:2:-0.00,-0.60,-5.79:6.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.60,-5.34:5.99 0/0:1:-0.00,-0.30,-3.17:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.43:9.02 0/0:3:-0.01,-0.91,-7.93:9.00 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.30,-2.17:2.98 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-2.97:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:3:-0.02,-0.91,-7.91:8.95 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.17:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.77:3.00 0/0:3:-0.00,-0.90,-9.21:9.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.04,-0.93,-7.16:8.90 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:1:-0.00,-0.30,-2.47:3.00 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:5:-0.00,-1.51,-15.67:15.03 0/0:4:-0.00,-1.21,-12.47:12.03
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20 82139 rs1836444 A G 0.28 FDRtranche25.00to35.00+ AB=0.25;AC=5;AF=0.10;AN=98;DB=1;DP=127;Dels=0.00;HRun=2;HaplotypeScore=31.20;MQ=21.17;MQ0=62;OQ=45.40;QD=4.54;SB=-260.00 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.53:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-10.78:9.03 0/1:3:-5.59,-0.91,-3.07:21.64 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.32:6.02 1/1:1:-2.00,-0.31,-0.01:2.97 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:4:-0.03,-1.23,-11.76:11.98 ./.:-1:0,0,0:-1 0/0:1:-0.04,-0.33,-1.87:2.95 1/1:1:-1.80,-0.32,-0.02:2.94 0/0:2:-0.00,-0.60,-7.82:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.73:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.53:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.02,-0.32,-2.17:2.98 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:1:-0.00,-0.30,-2.87:3.00 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.02,-0.62,-5.53:5.98 0/0:3:-0.00,-0.91,-10.60:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.02,-0.32,-2.17:2.98 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-4.07:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.53:6.02 0/0:1:-0.01,-0.31,-2.27:2.99 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.87:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.87:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:1:-0.00,-0.30,-3.77:3.01 ./.:-1:0,0,0:-1
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20 82215 rs6036082 G A 157.77 0 AB=0.46;AC=10;AF=0.14;AN=98;DB=1;DP=102;Dels=0.00;HRun=0;HaplotypeScore=38.30;MQ=40.56;MQ0=15;OQ=284.36;QD=16.73;SB=-482.62 GT:DP:GL:GQ 0/0:5:-0.02,-1.52,-12.85:14.98 0/0:2:-0.01,-0.61,-5.26:5.99 0/0:2:-0.00,-0.60,-5.56:6.00 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-4.79:5.98 1/1:2:-6.42,-0.61,-0.00:6.01 0/0:3:-0.00,-0.91,-9.16:9.02 0/0:2:-0.02,-0.62,-5.16:5.95 0/0:3:-0.00,-0.91,-9.13:9.02 0/0:4:-0.01,-1.21,-10.96:12.00 0/1:2:-1.66,-0.64,-3.21:10.19 0/0:2:-0.01,-0.61,-4.79:5.98 0/0:1:-0.00,-0.30,-3.17:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.90:3.00 1/1:2:-6.61,-0.60,-0.00:6.02 0/0:1:-0.00,-0.30,-3.10:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.90:3.00 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.31,-2.10:2.97 0/0:2:-0.00,-0.60,-6.44:6.02 ./.:-1:0,0,0:-1 1/1:1:-3.87,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.90:3.00 0/1:3:-6.41,-0.91,-2.70:17.92 ./.:-1:0,0,0:-1 0/0:2:-0.02,-0.62,-4.86:5.94 0/0:1:-0.00,-0.30,-2.70:3.00 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.80:3.00 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:1:-0.00,-0.30,-2.80:3.00 0/1:3:-7.04,-0.91,-2.60:16.91 0/0:1:-0.00,-0.30,-2.70:3.00 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/1:2:-3.76,-0.60,-2.60:19.92 0/0:4:-0.02,-1.22,-10.28:11.99 0/0:1:-0.03,-0.32,-1.70:2.92 0/0:3:-0.01,-0.91,-8.16:9.01 0/0:1:-0.00,-0.30,-2.90:3.00
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20 82217 rs1836442 G A 2405.66 0 AB=0.63;AC=61;AF=0.86;AN=98;DB=1;DP=100;Dels=0.00;HRun=0;HaplotypeScore=27.45;MQ=42.50;MQ0=13;OQ=1865.31;QD=21.20;SB=-964.91 GT:DP:GL:GQ 1/1:5:-17.32,-1.51,-0.01:15.04 1/1:1:-3.56,-0.30,-0.00:3.01 0/0:2:-0.00,-0.60,-5.86:6.01 ./.:-1:0,0,0:-1 1/1:1:-3.97,-0.30,-0.00:3.01 1/1:2:-6.62,-0.61,-0.00:6.01 1/1:3:-8.89,-0.92,-0.03:8.98 1/1:1:-3.06,-0.30,-0.00:3.01 1/1:3:-11.18,-0.90,-0.00:9.03 1/1:4:-12.76,-1.21,-0.01:12.02 1/1:2:-6.11,-0.61,-0.01:6.00 1/1:2:-6.13,-0.61,-0.01:6.01 1/1:1:-3.36,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 1/1:1:-4.07,-0.30,-0.00:3.01 1/1:2:-6.01,-0.61,-0.00:6.01 1/1:1:-3.97,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:1:-3.67,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.90:3.00 1/1:2:-7.31,-0.60,-0.00:6.02 ./.:-1:0,0,0:-1 1/1:1:-3.77,-0.30,-0.00:3.01 1/1:2:-6.23,-0.61,-0.01:6.00 1/1:1:-4.07,-0.30,-0.00:3.01 1/1:3:-8.78,-0.92,-0.02:8.99 ./.:-1:0,0,0:-1 0/1:2:-3.47,-0.60,-3.07:24.66 1/1:1:-3.87,-0.30,-0.00:3.01 1/1:1:-3.77,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.60:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.30,-2.40:2.99 1/1:1:-3.57,-0.30,-0.00:3.01 1/1:1:-3.97,-0.30,-0.00:3.01 1/1:2:-7.43,-0.60,-0.00:6.02 1/1:1:-3.87,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:2:-7.42,-0.60,-0.00:6.02 0/1:4:-7.74,-1.21,-4.99:37.82 1/1:2:-4.72,-0.62,-0.03:5.96 0/1:4:-3.79,-1.21,-6.83:25.73 1/1:1:-3.47,-0.30,-0.00:3.01
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20 82701 rs62190471 T C 144000.00 0 AB=0.52;AC=17;AF=0.19;AN=98;DB=1;DP=142;Dels=0.00;HRun=0;HaplotypeScore=17.25;MQ=55.77;MQ0=0;OQ=538.23;QD=13.46;SB=-704.52 GT:DP:GL:GQ 1/1:1:-2.97,-0.30,-0.00:3.01 0/0:2:-0.00,-0.60,-7.91:6.02 0/1:3:-5.84,-0.90,-4.07:31.65 ./.:-1:0,0,0:-1 0/0:6:-0.01,-1.81,-20.75:18.05 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-7.81:6.02 0/0:3:-0.00,-0.90,-11.59:9.03 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:4:-0.00,-1.21,-14.92:12.04 0/0:2:-0.00,-0.60,-7.11:6.02 0/0:3:-0.00,-0.90,-11.28:9.03 0/0:2:-0.00,-0.60,-7.11:6.02 0/0:3:-0.00,-0.90,-11.78:9.03 0/0:2:-0.00,-0.60,-7.61:6.02 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:4:-0.01,-1.21,-13.25:12.02 0/0:1:-0.00,-0.30,-3.66:3.01 1/1:2:-5.89,-0.61,-0.01:5.99 0/0:2:-0.00,-0.60,-7.01:6.02 1/1:2:-6.26,-0.60,-0.00:6.01 0/0:4:-0.00,-1.21,-14.72:12.04 0/1:7:-5.96,-2.13,-17.30:38.34 0/1:3:-3.60,-0.90,-7.41:26.93 1/1:1:-3.27,-0.30,-0.00:3.01 0/0:2:-0.02,-0.62,-6.13:5.99 0/1:3:-6.14,-0.90,-3.66:27.53 0/1:6:-9.43,-1.81,-10.67:76.26 0/0:3:-0.00,-0.90,-11.08:9.03 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:3:-0.00,-0.90,-11.38:9.03 0/0:5:-0.00,-1.51,-19.11:15.05 0/1:4:-6.47,-1.21,-7.62:52.60 0/0:2:-0.00,-0.60,-6.91:6.02 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:2:-0.00,-0.60,-7.31:6.02 0/0:4:-0.00,-1.21,-14.72:12.04 0/0:3:-0.00,-0.91,-9.98:9.02 0/1:3:-2.57,-0.90,-7.51:16.64 0/0:7:-0.00,-2.11,-25.39:21.06 0/0:1:-0.00,-0.30,-3.77:3.01 1/1:1:-2.17,-0.30,-0.01:2.98 0/0:2:-0.00,-0.60,-7.41:6.02 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:3:-0.00,-0.90,-10.88:9.03 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:3:-0.00,-0.90,-10.67:9.03 0/0:1:-0.00,-0.30,-3.76:3.01
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20 83196 rs62190472 A T 0.78 FDRtranche25.00to35.00+ AB=0.60;AC=1;AF=0.01;AN=98;DB=1;DP=146;Dels=0.00;HRun=1;HaplotypeScore=20.91;MQ=56.21;MQ0=0;OQ=14.83;QD=2.97;SB=-482.38 GT:DP:GL:GQ 0/0:6:-0.01,-1.82,-19.75:18.03 0/0:3:-0.00,-0.90,-10.58:9.03 0/0:1:-0.00,-0.30,-2.90:3.00 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-9.24:9.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.54:3.01 0/0:6:-0.01,-1.82,-18.69:18.02 0/0:2:-0.00,-0.60,-6.04:6.00 0/0:5:-0.00,-1.51,-17.46:15.04 0/0:5:-0.00,-1.51,-16.63:15.04 0/0:2:-0.01,-0.61,-5.50:6.00 0/0:2:-0.01,-0.61,-5.34:5.98 0/0:3:-0.00,-0.91,-9.84:9.02 0/0:4:-0.01,-1.21,-12.52:12.02 0/0:3:-0.01,-0.91,-9.44:9.01 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-9.60:9.02 0/0:2:-0.00,-0.60,-6.74:6.02 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:3:-0.00,-0.90,-10.14:9.03 0/0:4:-0.00,-1.21,-13.58:12.03 0/0:2:-0.00,-0.60,-6.84:6.02 0/0:4:-0.00,-1.21,-13.92:12.04 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.68:6.02 0/0:4:-0.00,-1.21,-13.42:12.03 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:3:-0.00,-0.90,-10.22:9.03 0/0:4:-0.00,-1.21,-13.38:12.03 0/0:2:-0.00,-0.60,-7.04:6.02 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:4:-0.02,-1.22,-12.48:11.99 0/0:2:-0.01,-0.61,-5.70:5.99 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-6.94:6.02 0/0:2:-0.00,-0.60,-5.74:6.01 0/1:5:-6.54,-1.51,-9.44:50.33 0/0:3:-0.03,-0.92,-8.48:8.90 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.74:6.02 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:5:-0.00,-1.51,-16.10:15.04 0/0:4:-0.00,-1.21,-13.46:12.03 0/0:4:-0.00,-1.21,-13.28:12.03 0/0:4:-0.00,-1.21,-13.06:12.03
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20 83250 . C G 588.28 HARD_TO_VALIDATE;SnpCluster AB=0.65;AC=16;AF=0.17;AN=98;DB=0;DP=185;Dels=0.00;HRun=0;HaplotypeScore=86.04;MQ=36.61;MQ0=48;QD=10.89;SB=-677.25 GT:DP:GL:GQ 1/1:2:-8.04,-0.60,-0.00:6.02 0/0:2:-0.00,-0.60,-8.68:6.02 0/0:3:-0.01,-0.91,-10.49:9.03 0/1:2:-3.95,-0.60,-4.15:33.45 0/0:5:-0.00,-1.51,-20.37:15.05 0/1:4:-12.73,-1.21,-3.59:23.86 0/0:5:-0.00,-1.51,-21.13:15.05 0/0:4:-0.00,-1.21,-15.78:12.04 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-20.87:15.05 0/1:4:-8.15,-1.21,-7.34:61.30 0/0:3:-0.00,-0.90,-12.63:9.03 0/0:2:-0.01,-0.61,-7.08:6.01 0/0:1:-0.00,-0.30,-4.49:3.01 ./.:-1:0,0,0:-1 0/1:4:-3.65,-1.21,-12.13:24.42 0/0:1:-0.00,-0.30,-3.85:3.01 0/0:5:-0.04,-1.54,-19.02:15.01 0/0:4:-0.00,-1.21,-15.09:12.04 0/0:3:-0.00,-0.91,-11.19:9.03 0/0:1:-0.00,-0.30,-4.09:3.01 0/1:6:-6.54,-1.82,-16.44:47.22 0/0:3:-0.01,-0.92,-11.48:9.02 0/1:4:-3.39,-1.21,-12.58:21.85 0/0:3:-0.01,-0.91,-11.63:9.03 0/1:3:-3.75,-0.90,-7.94:28.43 0/0:4:-0.00,-1.21,-16.18:12.04 0/1:4:-5.89,-1.23,-8.17:46.64 0/1:2:-3.65,-0.60,-4.39:30.44 0/0:3:-0.00,-0.90,-12.63:9.03 0/0:2:-0.00,-0.60,-8.68:6.02 0/0:3:-0.00,-0.90,-13.28:9.03 0/0:1:-0.00,-0.30,-3.85:3.01 1/1:2:-7.09,-0.60,-0.00:6.02 0/0:3:-0.00,-0.91,-11.83:9.03 0/0:2:-0.00,-0.60,-8.38:6.02 0/1:2:-3.65,-0.60,-4.19:30.44 0/0:1:-0.00,-0.30,-4.19:3.01 1/1:1:-3.45,-0.30,-0.00:3.01 0/0:5:-0.00,-1.51,-20.82:15.05 0/0:2:-0.00,-0.60,-7.94:6.02 0/0:1:-0.00,-0.30,-4.29:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-8.54:6.02 0/0:1:-0.02,-0.32,-2.59:3.00 0/0:3:-0.00,-0.90,-12.43:9.03 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-11.59:9.03 0/0:2:-0.00,-0.60,-8.58:6.02
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20 83252 rs6137896 G C 1331.58 HARD_TO_VALIDATE;SnpCluster AB=0.66;AC=25;AF=0.31;AN=98;DB=1;DP=186;Dels=0.00;HRun=0;HaplotypeScore=54.04;MQ=33.89;MQ0=61;QD=12.68;SB=-1062.43 GT:DP:GL:GQ 0/0:2:-0.01,-0.61,-6.69:6.01 1/1:2:-8.58,-0.60,-0.00:6.02 0/1:3:-7.40,-0.91,-3.15:22.42 0/1:2:-3.15,-0.60,-3.85:25.42 0/1:5:-16.28,-1.51,-3.55:20.41 0/0:4:-0.01,-1.21,-15.68:12.03 0/1:4:-12.29,-1.21,-4.59:33.88 1/1:4:-15.28,-1.21,-0.00:12.04 ./.:-1:0,0,0:-1 0/1:5:-11.81,-1.52,-5.20:36.71 0/1:3:-3.15,-0.91,-7.74:22.42 0/1:2:-4.29,-0.60,-3.35:27.43 0/0:2:-0.03,-0.63,-4.99:5.99 0/0:1:-0.00,-0.30,-4.05:3.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-15.43:12.04 0/0:1:-0.00,-0.30,-4.59:3.01 0/0:1:-0.04,-0.34,-2.39:2.99 0/1:4:-10.64,-1.21,-4.40:31.88 0/0:3:-0.00,-0.91,-12.03:9.03 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-17.63:15.04 0/0:3:-0.00,-0.90,-11.44:9.03 0/1:4:-3.90,-1.21,-11.59:26.88 1/1:3:-12.73,-0.90,-0.00:9.03 0/0:3:-0.00,-0.91,-11.29:9.03 0/1:4:-3.78,-1.24,-9.69:25.47 0/0:3:-0.00,-0.91,-11.09:9.03 0/0:2:-0.00,-0.60,-7.29:6.02 0/1:2:-4.29,-0.60,-4.49:36.90 0/1:2:-4.30,-0.61,-2.55:19.35 0/1:3:-4.60,-0.91,-6.79:36.90 0/0:1:-0.00,-0.30,-3.99:3.01 0/0:1:-0.00,-0.30,-2.95:3.01 0/1:4:-3.46,-1.22,-10.19:22.42 1/1:1:-4.29,-0.30,-0.00:3.01 0/0:2:-0.00,-0.60,-7.19:6.02 0/0:1:-0.00,-0.30,-3.95:3.01 0/0:1:-0.00,-0.30,-3.65:3.01 0/1:5:-4.32,-1.53,-14.23:27.90 0/0:2:-0.00,-0.60,-7.94:6.02 0/0:1:-0.00,-0.30,-2.95:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.74:6.02 0/0:1:-0.00,-0.30,-3.75:3.01 0/1:3:-3.75,-0.91,-6.99:28.43 ./.:-1:0,0,0:-1 0/0:3:-0.04,-0.94,-9.93:9.01 0/1:2:-4.29,-0.60,-3.45:28.44
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20 83254 . G C 152.46 HARD_TO_VALIDATE;SnpCluster AB=0.72;AC=4;AF=0.07;AN=98;DB=0;DP=189;Dels=0.00;HRun=0;HaplotypeScore=76.76;MQ=32.47;MQ0=68;QD=6.93;SB=-516.76 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-7.84:6.02 0/0:2:-0.00,-0.60,-7.19:6.02 0/1:3:-7.19,-0.91,-3.85:29.44 0/0:2:-0.00,-0.60,-8.44:6.02 0/0:6:-0.00,-1.81,-23.37:18.06 0/0:4:-0.00,-1.21,-16.78:12.04 0/1:4:-3.55,-1.21,-12.43:23.42 0/0:3:-0.01,-0.91,-10.29:9.02 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-19.33:15.05 0/0:3:-0.01,-0.91,-11.13:9.02 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:1:-0.00,-0.30,-4.05:3.01 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.22,-14.03:12.03 0/0:1:-0.00,-0.30,-4.69:3.01 0/0:1:-0.01,-0.31,-2.79:3.00 0/0:4:-0.00,-1.21,-17.07:12.04 0/0:3:-0.00,-0.91,-12.03:9.03 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-18.23:15.04 0/0:3:-0.00,-0.91,-11.14:9.03 0/0:4:-0.00,-1.21,-15.03:12.04 0/0:3:-0.00,-0.91,-11.19:9.03 0/0:3:-0.00,-0.90,-11.79:9.03 0/0:4:-0.00,-1.21,-15.68:12.04 0/0:3:-0.00,-0.90,-11.89:9.03 0/0:1:-0.00,-0.30,-3.85:3.01 0/1:2:-4.09,-0.60,-4.39:34.90 0/0:2:-0.00,-0.60,-7.49:6.02 0/0:3:-0.00,-0.91,-11.14:9.03 0/0:1:-0.00,-0.30,-4.19:3.01 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:3:-0.01,-0.91,-10.59:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.29:6.02 0/0:1:-0.00,-0.30,-3.85:3.01 0/0:1:-0.00,-0.30,-3.55:3.01 0/0:5:-0.01,-1.51,-17.88:15.04 0/0:2:-0.00,-0.60,-8.04:6.02 0/0:1:-0.00,-0.30,-3.75:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-8.24:6.02 0/0:1:-0.00,-0.30,-3.65:3.01 0/1:3:-3.85,-0.90,-7.39:29.44 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-11.13:9.03 0/0:2:-0.00,-0.60,-7.49:6.02
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20 83260 . G C 48.53 HARD_TO_VALIDATE;SnpCluster AB=0.81;AC=2;AF=0.02;AN=98;DB=0;DP=180;Dels=0.00;HRun=0;HaplotypeScore=73.15;MQ=26.89;MQ0=77;QD=2.55;SB=-420.97 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-8.54:6.02 0/0:1:-0.00,-0.30,-3.55:3.01 0/0:3:-0.04,-0.94,-10.29:8.99 0/0:2:-0.00,-0.60,-8.44:6.02 0/1:6:-8.19,-1.81,-16.38:63.78 0/0:4:-0.00,-1.21,-16.28:12.04 0/0:4:-0.00,-1.21,-17.12:12.04 0/0:4:-0.01,-1.21,-13.43:12.03 ./.:-1:0,0,0:-1 0/1:5:-3.80,-1.51,-15.33:22.86 0/0:2:-0.00,-0.60,-7.84:6.02 0/0:1:-0.00,-0.30,-3.35:3.01 0/0:2:-0.00,-0.61,-6.59:6.02 0/0:1:-0.00,-0.30,-4.05:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-10.89:9.03 0/0:1:-0.00,-0.30,-4.69:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-11.88:9.03 0/0:3:-0.00,-0.91,-11.83:9.03 ./.:-1:0,0,0:-1 0/0:4:-0.03,-1.23,-13.73:12.01 0/0:3:-0.00,-0.90,-11.34:9.03 0/0:2:-0.00,-0.60,-7.29:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.44:6.02 0/0:4:-0.00,-1.21,-15.18:12.04 0/0:2:-0.00,-0.60,-7.94:6.02 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:1:-0.00,-0.30,-3.85:3.01 0/0:3:-0.00,-0.91,-10.44:9.03 0/0:1:-0.00,-0.30,-3.89:3.01 0/0:1:-0.00,-0.30,-3.05:3.01 0/0:4:-0.02,-1.23,-13.18:12.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:1:-0.00,-0.30,-3.55:3.01 0/0:5:-0.01,-1.51,-17.28:15.04 0/0:2:-0.00,-0.60,-7.54:6.02 0/0:1:-0.00,-0.30,-3.65:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-8.04:6.02 0/0:1:-0.00,-0.30,-3.65:3.01 0/0:2:-0.02,-0.62,-5.99:6.00 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.92,-10.93:9.02 0/0:2:-0.00,-0.60,-7.49:6.02
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20 83262 . G C 30.20 HARD_TO_VALIDATE;SnpCluster AB=0.80;AC=1;AF=0.01;AN=98;DB=0;DP=182;Dels=0.00;HRun=0;HaplotypeScore=62.69;MQ=25.76;MQ0=81;QD=3.02;SB=-413.98 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-8.44:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.84:6.02 0/0:2:-0.00,-0.60,-8.34:6.02 0/1:6:-8.39,-1.81,-16.08:65.78 0/0:4:-0.00,-1.21,-16.98:12.04 0/0:4:-0.00,-1.21,-16.92:12.04 0/0:3:-0.00,-0.90,-11.69:9.03 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-14.43:12.04 0/0:2:-0.00,-0.60,-8.04:6.02 0/0:1:-0.00,-0.30,-3.35:3.01 0/0:2:-0.00,-0.61,-6.69:6.02 0/0:1:-0.00,-0.30,-4.05:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.69:9.03 0/0:1:-0.00,-0.30,-4.69:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-13.08:9.03 0/0:3:-0.00,-0.91,-11.93:9.03 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-14.43:12.04 0/0:3:-0.00,-0.90,-11.24:9.03 0/0:2:-0.00,-0.60,-7.09:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-8.04:6.02 0/0:4:-0.00,-1.21,-15.58:12.04 0/0:2:-0.00,-0.60,-7.94:6.02 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:1:-0.00,-0.30,-4.29:3.01 0/0:1:-0.00,-0.30,-3.85:3.01 0/0:3:-0.00,-0.91,-11.04:9.03 0/0:1:-0.00,-0.30,-3.59:3.01 0/0:1:-0.00,-0.30,-3.65:3.01 0/0:4:-0.02,-1.22,-13.58:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.65:3.01 0/0:1:-0.00,-0.30,-3.75:3.01 0/0:1:-0.00,-0.30,-3.55:3.01 0/0:5:-0.01,-1.51,-18.38:15.04 0/0:2:-0.00,-0.60,-7.84:6.02 0/0:1:-0.00,-0.30,-3.75:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-8.54:6.02 0/0:1:-0.00,-0.30,-3.65:3.01 0/0:2:-0.00,-0.60,-7.29:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-10.53:9.03 0/0:2:-0.00,-0.60,-7.49:6.02
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20 83265 rs6137900 T C 274.44 HARD_TO_VALIDATE;SnpCluster AB=0.68;AC=17;AF=0.22;AN=98;DB=1;DP=179;Dels=0.00;HRun=0;HaplotypeScore=27.91;MQ=24.40;MQ0=85;QD=7.22;SB=-494.18 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-7.22:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.73:6.02 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:6:-0.00,-1.81,-22.48:18.06 0/0:4:-0.00,-1.21,-15.35:12.04 0/1:4:-3.07,-1.21,-10.88:18.64 0/0:3:-0.00,-0.90,-11.29:9.03 ./.:-1:0,0,0:-1 0/1:4:-1.47,-1.22,-11.23:2.52 0/0:2:-0.00,-0.60,-7.13:6.02 0/0:1:-0.00,-0.30,-4.17:3.01 0/0:2:-0.00,-0.60,-7.43:6.02 1/1:1:-3.00,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.99:9.03 1/1:1:-3.07,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 0/1:2:-2.87,-0.61,-2.76:21.51 0/0:3:-0.00,-0.90,-11.08:9.03 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-14.86:12.04 0/1:3:-5.79,-0.91,-3.87:29.65 0/0:2:-0.00,-0.60,-7.73:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:4:-0.00,-1.21,-15.15:12.04 1/1:2:-5.76,-0.60,-0.00:6.01 1/1:1:-3.00,-0.30,-0.00:3.01 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:1:-0.00,-0.30,-3.47:3.01 0/1:2:-3.00,-0.60,-3.87:23.93 0/0:1:-0.00,-0.30,-3.66:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.69:9.03 ./.:-1:0,0,0:-1 1/1:1:-2.60,-0.30,-0.00:3.00 0/0:1:-0.00,-0.30,-3.87:3.01 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-18.82:15.05 0/0:2:-0.00,-0.60,-7.62:6.02 1/1:1:-2.80,-0.30,-0.00:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-8.02:6.02 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:2:-0.00,-0.60,-7.03:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.88:9.03 0/0:2:-0.00,-0.60,-7.73:6.02
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20 83267 . T C 61.14 HARD_TO_VALIDATE;SnpCluster AB=0.67;AC=2;AF=0.03;AN=98;DB=0;DP=175;Dels=0.00;HRun=0;HaplotypeScore=32.45;MQ=23.96;MQ0=87;QD=4.37;SB=-433.32 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-7.12:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.63:6.02 0/0:1:-0.00,-0.30,-3.37:3.01 0/0:5:-0.00,-1.51,-19.02:15.05 0/0:4:-0.00,-1.21,-15.35:12.04 0/1:4:-6.17,-1.21,-7.51:49.60 0/1:3:-5.86,-0.90,-3.97:30.65 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.30:9.03 0/0:3:-0.02,-0.92,-9.49:8.98 0/0:1:-0.00,-0.30,-4.17:3.01 0/0:2:-0.00,-0.60,-7.43:6.02 0/0:1:-0.00,-0.30,-2.87:3.00 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.69:9.03 0/0:1:-0.00,-0.30,-3.76:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:3:-0.00,-0.90,-11.18:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.82:6.02 0/0:3:-0.00,-0.90,-11.50:9.03 0/0:2:-0.00,-0.60,-7.23:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:3:-0.00,-0.90,-11.69:9.03 0/0:2:-0.00,-0.60,-7.42:6.02 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:2:-0.00,-0.60,-7.83:6.02 0/0:1:-0.00,-0.30,-3.66:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.19:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.37:3.01 0/0:1:-0.00,-0.30,-3.77:3.01 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-18.62:15.05 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:1:-0.00,-0.30,-3.87:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.92:6.02 0/0:1:-0.00,-0.30,-3.67:3.01 0/0:2:-0.00,-0.60,-7.73:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.98:9.03 0/0:2:-0.00,-0.60,-7.43:6.02
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20 83535 . G T 0.01 FDRtranche25.00to35.00+ AB=0.49;AC=6;AF=0.08;AN=98;DB=0;DP=100;Dels=0.00;HRun=1;HaplotypeScore=7.80;MQ=58.27;MQ0=0;OQ=40.35;QD=3.10;SB=-417.00 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-5.96:6.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:1:-0.00,-0.30,-3.46:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.90:3.00 0/0:2:-0.00,-0.60,-6.40:6.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.16:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:1:-0.01,-0.30,-2.00:2.97 0/0:1:-0.00,-0.30,-3.46:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.37:9.02 0/1:3:-1.60,-0.93,-5.49:6.69 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:3:-0.02,-0.91,-7.86:8.88 ./.:-1:0,0,0:-1 0/1:2:-2.10,-0.61,-3.21:14.86 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:3:-0.00,-0.90,-9.02:9.01 0/0:2:-0.00,-0.60,-5.76:6.01 0/0:2:-0.00,-0.60,-5.90:6.01 0/0:4:-0.01,-1.21,-10.66:11.95 0/0:3:-0.04,-0.92,-6.66:8.77 0/0:1:-0.05,-0.32,-1.20:2.72 0/0:1:-0.01,-0.30,-2.10:2.98 0/0:3:-0.00,-0.91,-9.12:9.02 0/0:2:-0.01,-0.60,-5.40:5.98 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:3:-0.00,-0.90,-9.87:9.02 1/1:1:-1.69,-0.32,-0.03:2.92 0/0:2:-0.01,-0.61,-5.61:6.00 0/0:3:-0.02,-0.91,-7.82:8.88 0/0:3:-0.04,-0.92,-6.92:8.82 0/0:1:-0.00,-0.30,-2.80:3.00 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.96:3.01 0/0:1:-0.01,-0.31,-1.70:2.92 0/0:4:-0.00,-1.21,-12.07:12.02 0/0:5:-0.01,-1.51,-14.02:14.98 ./.:-1:0,0,0:-1 1/1:1:-2.09,-0.31,-0.01:2.97 0/0:2:-0.02,-0.61,-4.86:5.91
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20 83654 . G T 0.00 FDRtranche25.00to35.00+ AB=0.70;AC=5;AF=0.06;AN=98;DB=0;DP=118;Dels=0.00;HRun=7;HaplotypeScore=15.30;MQ=57.97;MQ0=0;OQ=22.72;QD=1.89;SB=-437.98 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.71:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-6.90:6.02 0/0:5:-0.01,-1.51,-14.47:14.98 0/0:1:-0.00,-0.30,-4.26:3.01 0/0:1:-0.00,-0.30,-2.96:3.01 0/1:3:-1.80,-0.92,-6.04:8.78 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.06:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.36:6.01 1/1:1:-3.49,-0.30,-0.00:3.01 0/1:3:-2.10,-0.91,-7.01:11.85 0/0:2:-0.01,-0.61,-5.26:5.97 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:2:-0.01,-0.61,-5.31:5.98 0/0:2:-0.01,-0.61,-5.61:6.00 0/0:4:-0.01,-1.21,-11.56:12.01 0/0:5:-0.02,-1.51,-13.97:14.96 0/0:1:-0.01,-0.30,-2.36:2.99 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.52:8.98 0/0:1:-0.00,-0.30,-2.86:3.00 0/0:3:-0.00,-0.90,-10.02:9.02 0/0:3:-0.00,-0.90,-9.52:9.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:4:-0.00,-1.21,-12.77:12.03 0/0:3:-0.00,-0.90,-9.46:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-6.51:6.02 0/0:4:-0.01,-1.21,-11.92:12.00 0/0:4:-0.05,-1.22,-10.77:11.74 0/0:4:-0.00,-1.21,-12.67:12.03 0/0:2:-0.00,-0.60,-6.11:6.01 0/0:2:-0.00,-0.60,-5.76:6.01 0/1:5:-2.23,-1.53,-10.62:7.08 0/0:1:-0.00,-0.30,-2.96:3.01 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:2:-0.00,-0.60,-5.40:6.00 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:4:-0.00,-1.21,-11.97:12.02 0/0:3:-0.00,-0.90,-9.32:9.02 0/0:2:-0.00,-0.60,-6.31:6.01 0/0:1:-0.00,-0.30,-3.00:3.01 ./.:-1:0,0,0:-1
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20 83837 . A C 0.41 FDRtranche25.00to35.00+ AB=0.67;AC=3;AF=0.03;AN=98;DB=0;DP=150;Dels=0.00;HRun=0;HaplotypeScore=23.77;MQ=57.40;MQ0=0;OQ=14.39;QD=3.60;SB=-460.00 GT:DP:GL:GQ 0/0:2:-0.01,-0.61,-5.73:5.97 0/0:4:-0.04,-1.22,-9.56:11.79 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.43:6.01 1/1:1:-3.26,-0.30,-0.00:3.01 0/0:2:-0.00,-0.60,-6.43:6.01 0/0:1:-0.00,-0.30,-3.24:3.01 0/0:1:-0.00,-0.30,-3.14:3.01 0/0:2:-0.01,-0.60,-4.98:5.99 0/0:4:-2.10,-3.24,-12.96:11.39 0/0:3:-0.01,-0.91,-7.93:8.97 0/0:3:-0.00,-0.90,-9.42:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.54:3.01 0/0:3:-0.02,-0.91,-7.87:8.93 0/0:6:-0.01,-1.81,-17.24:17.99 0/0:6:-0.05,-1.83,-17.94:17.78 0/0:2:-0.00,-0.60,-6.63:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.58:6.00 0/0:3:-0.00,-0.90,-10.27:9.02 0/0:3:-0.01,-0.91,-7.72:8.99 0/0:3:-0.00,-0.90,-9.52:9.02 0/0:2:-0.00,-0.60,-6.18:6.01 0/0:2:-0.00,-0.60,-5.88:6.01 0/0:4:-0.00,-1.21,-12.71:12.03 0/0:2:-0.01,-0.60,-4.88:5.98 0/0:3:-0.05,-0.92,-6.62:8.72 0/1:3:-2.89,-0.92,-4.68:19.70 0/0:2:-0.00,-0.60,-7.19:6.02 0/0:4:-0.00,-1.21,-12.51:12.02 0/0:3:-0.01,-0.91,-8.82:9.00 0/0:1:-0.00,-0.30,-2.34:2.99 0/0:1:-0.00,-0.30,-3.54:3.01 0/0:4:-0.00,-1.21,-12.61:12.03 0/0:1:-0.00,-0.30,-3.14:3.01 0/0:3:-0.01,-0.91,-9.33:9.00 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:3:-0.01,-0.91,-8.77:8.98 ./.:-1:0,0,0:-1 0/0:4:-0.02,-1.21,-11.41:11.90 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.83:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:1:-0.00,-0.30,-3.09:3.01 0/0:5:-0.00,-1.51,-15.79:15.03 0/0:4:-0.01,-1.21,-11.66:12.00 0/0:6:-0.01,-1.81,-18.49:18.03
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20 83940 . A G 0.01 FDRtranche25.00to35.00+ AB=0.49;AC=8;AF=0.08;AN=98;DB=0;DP=190;Dels=0.00;HRun=4;HaplotypeScore=51.64;MQ=58.14;MQ0=0;OQ=42.20;QD=3.01;SB=-471.79 GT:DP:GL:GQ 0/0:3:-0.01,-0.91,-10.19:9.01 0/0:6:-0.00,-1.81,-23.26:18.06 1/1:1:-1.70,-0.32,-0.03:2.92 0/0:1:-0.00,-0.30,-4.06:3.01 0/0:4:-0.02,-1.22,-11.65:12.01 0/0:2:-0.00,-0.60,-7.82:6.02 0/0:5:-0.00,-1.51,-17.81:15.04 0/0:1:-0.00,-0.30,-3.96:3.01 0/0:3:-0.00,-0.91,-10.08:9.02 0/0:5:-0.02,-1.52,-16.80:15.02 0/0:5:-0.01,-1.51,-17.31:15.04 0/0:3:-0.01,-0.91,-8.98:9.01 0/0:1:-0.00,-0.30,-2.97:3.01 1/1:1:-1.60,-0.33,-0.04:2.89 0/0:2:-0.00,-0.60,-6.91:6.02 0/0:6:-0.00,-1.81,-21.83:18.06 0/0:6:-0.00,-1.81,-22.56:18.06 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:2:-0.04,-0.63,-5.41:5.94 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:7:-0.01,-2.11,-24.32:21.06 0/0:1:-0.04,-0.33,-1.87:2.95 0/0:5:-0.06,-1.55,-15.31:14.95 0/0:5:-0.00,-1.51,-18.00:15.05 0/0:3:-0.01,-0.91,-9.88:9.01 0/0:10:-0.05,-3.05,-35.61:30.01 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:6:-0.04,-1.84,-20.15:17.99 0/1:3:-1.80,-0.92,-7.43:8.78 0/1:3:-1.50,-0.93,-7.46:5.63 0/0:4:-0.00,-1.21,-15.12:12.04 0/0:3:-0.00,-0.90,-12.08:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.81:6.02 0/0:3:-0.00,-0.90,-11.08:9.03 0/0:3:-0.00,-0.90,-10.97:9.03 0/0:7:-0.06,-2.16,-21.32:20.96 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:4:-0.02,-1.22,-13.13:12.00 0/1:2:-2.10,-0.61,-2.87:14.87 0/0:3:-0.04,-0.94,-7.88:8.96 0/0:1:-0.00,-0.30,-3.57:3.01 0/0:1:-2.54,-2.61,-2.69:0.71 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.37:3.01 0/1:2:-2.70,-0.60,-3.76:20.92 0/0:7:-0.00,-2.11,-25.81:21.07 0/0:6:-0.03,-1.83,-20.43:17.99 0/0:6:-0.01,-1.81,-20.16:18.04
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20 84036 . G A 0.87 FDRtranche25.00to35.00+ AB=0.75;AC=3;AF=0.03;AN=98;DB=0;DP=153;Dels=0.00;HRun=0;HaplotypeScore=17.30;MQ=57.20;MQ0=0;OQ=14.23;QD=2.85;SB=-487.46 GT:DP:GL:GQ 0/0:3:-0.00,-0.91,-9.36:9.02 0/0:3:-0.00,-0.90,-9.93:9.02 0/0:5:-0.00,-1.51,-17.23:15.04 0/1:4:-4.07,-1.21,-9.53:28.64 0/0:6:-0.01,-1.82,-17.54:18.01 0/0:3:-0.01,-0.91,-9.03:9.00 0/0:3:-0.00,-0.90,-9.43:9.02 0/0:7:-0.01,-2.11,-21.89:21.04 0/0:2:-0.00,-0.60,-5.99:6.01 0/0:8:-0.04,-2.43,-21.10:23.89 0/0:3:-0.00,-0.90,-10.36:9.03 0/0:6:-0.02,-1.82,-17.37:17.99 1/1:1:-2.36,-0.31,-0.01:2.99 0/0:2:-0.00,-0.60,-6.76:6.02 0/0:1:-0.00,-0.30,-2.87:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.44:6.02 0/0:1:-0.00,-0.30,-2.50:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:2:-0.00,-0.60,-5.64:6.01 0/0:7:-0.01,-2.11,-21.52:21.04 0/0:4:-0.00,-1.21,-12.33:12.02 0/0:1:-0.00,-0.30,-3.37:3.01 0/0:3:-0.01,-0.91,-8.86:9.01 0/0:7:-0.02,-2.12,-20.23:21.01 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.01,-0.31,-1.77:2.93 0/0:5:-0.01,-1.51,-14.50:15.02 0/0:3:-0.00,-0.90,-10.13:9.03 0/0:3:-0.00,-0.90,-9.13:9.02 0/0:2:-0.01,-0.61,-5.06:5.94 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:2:-0.01,-0.61,-5.49:5.97 0/0:2:-0.04,-0.62,-3.66:5.84 0/0:2:-0.02,-0.61,-4.64:5.92 0/0:3:-0.01,-0.91,-8.73:9.01 0/0:4:-0.05,-1.24,-10.93:11.88 ./.:-1:0,0,0:-1 0/0:3:-0.03,-0.91,-7.11:8.89 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.76:6.02 0/0:2:-0.00,-0.60,-6.34:6.01 0/0:4:-0.00,-1.21,-12.43:12.03 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:6:-0.07,-1.85,-15.22:17.83 0/0:4:-0.04,-1.23,-10.80:11.91
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20 84430 . C A 0.86 FDRtranche25.00to35.00+ AB=0.59;AC=2;AF=0.02;AN=98;DB=0;DP=206;Dels=0.00;HRun=0;HaplotypeScore=44.08;MQ=57.23;MQ0=0;OQ=19.65;QD=3.93;SB=-490.98 GT:DP:GL:GQ 0/0:2:-0.01,-0.60,-4.70:5.98 0/0:7:-0.03,-2.12,-18.17:20.96 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:1:-0.00,-0.30,-2.20:2.98 0/0:6:-0.02,-1.82,-16.53:17.95 0/0:3:-0.00,-0.91,-8.72:9.01 0/0:8:-0.02,-2.42,-22.13:23.98 0/0:11:-0.07,-3.34,-27.48:32.67 0/0:4:-0.00,-1.21,-12.42:12.02 0/0:6:-0.03,-1.82,-15.66:17.85 0/0:5:-0.01,-1.51,-13.82:14.98 0/0:1:-0.00,-0.30,-2.60:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.40:6.00 0/0:2:-0.00,-0.60,-5.40:6.00 0/0:5:-0.01,-1.51,-14.57:15.01 0/0:6:-0.01,-1.81,-19.09:18.04 0/0:1:-0.00,-0.30,-2.50:3.00 0/0:2:-0.01,-0.60,-4.70:5.98 0/1:2:-3.60,-0.60,-3.06:24.55 0/0:4:-0.01,-1.21,-11.26:12.00 0/0:9:-0.02,-2.72,-26.25:27.00 0/0:6:-0.01,-1.81,-17.12:18.01 0/0:3:-0.00,-0.90,-9.16:9.02 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:4:-0.01,-1.21,-11.46:12.00 0/0:5:-0.02,-1.51,-12.40:14.94 0/0:7:-0.01,-2.11,-18.97:20.99 0/0:5:-0.01,-1.51,-12.92:14.98 0/0:2:-0.00,-0.60,-5.16:6.00 0/0:4:-0.01,-1.21,-10.92:12.00 0/0:6:-0.01,-1.81,-17.32:18.01 0/0:1:-0.00,-0.30,-2.40:2.99 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:2:-0.00,-0.60,-5.86:6.00 0/0:2:-0.00,-0.60,-5.10:6.00 0/0:2:-0.00,-0.60,-5.46:6.00 0/0:4:-0.01,-1.21,-10.06:11.99 0/0:3:-0.00,-0.91,-8.72:9.01 0/0:2:-0.00,-0.60,-5.20:6.00 0/0:2:-0.00,-0.60,-5.66:6.00 0/0:3:-0.01,-0.91,-7.72:8.98 0/0:2:-0.01,-0.60,-4.60:5.98 0/0:2:-0.00,-0.60,-7.11:6.02 0/0:5:-0.01,-1.51,-14.93:15.01 0/0:7:-0.03,-2.12,-18.99:20.96 0/0:12:-0.02,-3.62,-34.10:36.01 0/0:9:-0.02,-2.72,-25.93:26.98 0/1:3:-3.70,-0.90,-6.71:27.92
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20 84788 . C A 0.00 FDRtranche25.00to35.00+ AB=0.55;AC=5;AF=0.05;AN=98;DB=0;DP=184;Dels=0.00;HRun=4;HaplotypeScore=24.13;MQ=56.57;MQ0=0;OQ=15.51;QD=0.97;SB=-470.98 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-10.17:9.03 0/0:7:-0.04,-2.12,-20.24:20.82 0/0:3:-0.02,-0.91,-8.56:8.92 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:4:-0.01,-1.21,-11.92:12.01 0/0:5:-0.00,-1.51,-16.77:15.04 0/0:6:-0.01,-1.81,-19.59:18.03 0/0:5:-0.01,-1.51,-14.97:15.01 0/0:7:-0.01,-2.11,-23.44:21.05 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:5:-0.01,-1.51,-16.03:15.03 0/0:3:-0.01,-0.91,-9.07:9.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-11.96:12.01 0/0:4:-0.05,-1.22,-10.97:11.74 0/0:4:-0.00,-1.21,-12.97:12.03 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:3:-0.00,-0.90,-9.26:9.02 1/1:1:-2.29,-0.31,-0.01:2.99 0/0:2:-0.01,-0.60,-4.90:5.97 0/0:4:-0.03,-1.22,-10.87:11.95 0/0:6:-0.05,-1.84,-16.23:17.87 0/0:6:-0.01,-1.81,-18.03:18.00 0/0:1:-0.00,-0.30,-3.46:3.01 0/1:2:-2.60,-0.60,-3.30:19.91 0/0:5:-0.01,-1.51,-15.37:15.02 0/0:4:-0.00,-1.21,-13.13:12.03 0/1:4:-2.20,-1.21,-9.91:9.85 0/0:3:-0.01,-0.91,-8.16:8.98 0/0:2:-0.00,-0.60,-5.36:6.00 0/0:2:-0.00,-0.60,-5.81:6.01 0/0:4:-0.01,-1.21,-12.02:11.97 0/0:3:-0.06,-0.92,-5.60:8.67 ./.:-1:0,0,0:-1 0/0:4:-0.04,-1.22,-10.56:11.80 0/0:4:-0.00,-1.21,-13.53:12.03 0/0:3:-0.00,-0.90,-9.37:9.02 0/1:6:-2.00,-1.82,-15.19:1.82 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-9.02:9.01 0/0:2:-0.00,-0.60,-6.61:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.03,-0.91,-7.82:8.85 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:3:-0.00,-0.90,-9.47:9.02 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:3:-0.00,-0.90,-9.96:9.02
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20 85189 . A G 1.97 FDRtranche12.50to25.00 AB=0.50;AC=3;AF=0.03;AN=98;DB=0;DP=146;Dels=0.00;HRun=1;HaplotypeScore=17.84;MQ=57.69;MQ0=0;OQ=16.61;QD=5.54;SB=-514.67 GT:DP:GL:GQ ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-4.07:3.01 0/0:3:-0.00,-0.90,-11.28:9.03 0/0:3:-0.00,-0.91,-10.40:9.03 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:3:-0.04,-0.94,-8.18:8.95 1/1:1:-3.00,-0.30,-0.00:3.01 0/0:3:-0.00,-0.90,-11.48:9.03 0/0:3:-0.00,-0.90,-11.38:9.03 0/1:2:-3.07,-0.60,-3.96:24.66 0/0:2:-0.00,-0.60,-7.72:6.02 0/0:1:-0.03,-0.32,-1.97:2.96 ./.:-1:0,0,0:-1 0/0:6:-0.00,-1.81,-23.35:18.06 0/0:4:-0.01,-1.21,-14.75:12.03 0/0:2:-0.00,-0.60,-7.72:6.02 0/0:2:-0.00,-0.60,-8.01:6.02 0/0:3:-0.00,-0.90,-10.69:9.03 0/0:1:-0.00,-0.30,-3.67:3.01 0/0:5:-0.00,-1.51,-18.01:15.05 0/0:1:-0.02,-0.32,-2.17:2.98 0/0:5:-0.01,-1.52,-17.00:15.02 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:2:-0.00,-0.60,-7.72:6.02 0/0:1:-0.01,-0.31,-2.57:3.00 0/0:3:-0.00,-0.91,-10.78:9.03 0/0:5:-0.01,-1.51,-17.89:15.04 0/0:4:-0.00,-1.21,-14.36:12.04 0/0:8:-0.00,-2.41,-29.66:24.07 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:3:-0.01,-0.91,-10.19:9.02 0/0:4:-0.00,-1.20,-16.03:12.04 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:3:-0.00,-0.90,-11.79:9.03 0/0:2:-0.00,-0.60,-7.71:6.02 0/0:2:-0.00,-0.60,-7.03:6.02 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:4:-0.00,-1.21,-15.15:12.04 0/0:4:-0.00,-1.21,-14.05:12.03 0/0:3:-0.00,-0.91,-10.58:9.02 0/0:5:-0.04,-1.54,-16.92:14.98 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:3:-0.00,-0.90,-11.18:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:2:-0.00,-0.60,-6.62:6.02 0/0:2:-0.00,-0.60,-7.72:6.02 0/0:5:-0.00,-1.51,-18.09:15.04 0/0:6:-0.01,-1.81,-19.79:18.04
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20 85439 . C A 0.00 FDRtranche25.00to35.00+ AB=0.62;AC=3;AF=0.04;AN=98;DB=0;DP=163;Dels=0.00;HRun=4;HaplotypeScore=28.48;MQ=55.14;MQ0=0;OQ=22.61;QD=1.19;SB=-442.95 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-5.86:6.00 0/0:4:-0.00,-1.21,-13.02:12.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.87:9.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-2.30:2.99 0/0:3:-0.00,-0.91,-9.37:9.02 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:3:-0.00,-0.90,-9.92:9.02 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:3:-0.00,-0.90,-10.17:9.03 0/1:3:-2.10,-0.91,-6.77:11.85 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:5:-0.00,-1.51,-16.03:15.04 ./.:-1:0,0,0:-1 0/0:6:-0.00,-1.81,-19.64:18.05 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:2:-0.06,-0.63,-3.06:5.75 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:3:-0.00,-0.90,-9.82:9.02 0/0:4:-0.00,-1.21,-12.43:12.03 0/0:8:-0.02,-2.42,-23.70:23.95 0/0:3:-0.00,-0.90,-9.47:9.02 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-6.41:6.02 0/0:2:-0.02,-0.61,-4.80:5.88 0/0:5:-0.02,-1.51,-14.73:14.95 0/0:2:-0.00,-0.60,-7.01:6.02 0/0:3:-0.00,-0.90,-9.97:9.02 0/0:4:-0.00,-1.21,-13.87:12.04 0/0:2:-0.00,-0.60,-5.96:6.01 0/0:1:-0.00,-0.30,-2.90:3.00 0/0:5:-0.00,-1.51,-15.77:15.03 0/0:4:-0.01,-1.21,-11.83:12.02 0/0:7:-0.02,-2.12,-20.34:21.00 0/0:6:-1.60,-1.83,-15.97:2.34 0/0:2:-0.00,-0.60,-5.56:6.00 0/0:1:-0.00,-0.30,-3.26:3.01 0/1:6:-2.60,-1.81,-14.49:7.89 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-5.40:6.00 0/0:3:-0.00,-0.90,-9.47:9.02 0/0:3:-0.00,-0.90,-9.77:9.02 0/0:2:-0.03,-0.61,-4.66:5.84 0/1:5:-3.60,-1.51,-13.07:20.91
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20 85878 . C A 0.01 FDRtranche25.00to35.00+ AB=0.63;AC=4;AF=0.05;AN=98;DB=0;DP=126;Dels=0.00;HRun=3;HaplotypeScore=10.08;MQ=55.13;MQ0=0;OQ=12.67;QD=1.81;SB=-420.98 GT:DP:GL:GQ 0/0:4:-0.00,-1.20,-13.76:12.03 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:3:-0.00,-0.90,-9.72:9.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.60:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.81:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:3:-0.00,-0.90,-9.42:9.02 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:3:-0.00,-0.90,-9.56:9.02 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.00:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.06:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.86:3.00 0/1:4:-2.60,-1.21,-9.17:13.90 0/0:4:-0.00,-1.21,-12.93:12.03 0/0:2:-0.00,-0.60,-5.66:6.00 0/0:2:-0.00,-0.60,-6.31:6.01 0/0:5:-0.01,-1.51,-14.16:14.99 0/0:5:-0.01,-1.51,-14.12:15.00 0/0:5:-0.01,-1.51,-14.72:14.97 0/0:4:-0.00,-1.21,-12.63:12.03 0/0:2:-0.00,-0.60,-5.56:6.00 0/0:4:-0.01,-1.21,-11.50:11.96 0/1:2:-1.90,-0.61,-2.42:12.83 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-15.37:14.99 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-8.86:9.01 1/1:1:-2.49,-0.30,-0.00:3.00 0/0:2:-0.00,-0.60,-5.80:6.01 0/0:3:-0.01,-0.91,-7.96:8.99 0/0:3:-0.00,-0.91,-9.27:9.02 0/0:2:-0.00,-0.60,-6.51:6.02 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.00,-0.60,-5.96:6.01 0/0:2:-0.00,-0.60,-6.96:6.02 0/0:2:-0.00,-0.60,-6.00:6.01 0/0:5:-0.01,-1.51,-13.46:15.00 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:2:-0.00,-0.60,-6.76:6.02 0/0:3:-0.00,-0.90,-9.92:9.02
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20 85990 . G A 0.01 FDRtranche25.00to35.00+ AB=0.78;AC=3;AF=0.03;AN=98;DB=0;DP=129;Dels=0.00;HRun=4;HaplotypeScore=34.82;MQ=54.61;MQ0=0;OQ=23.05;QD=1.65;SB=-431.97 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-7.29:6.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-7.19:6.02 0/0:6:-0.02,-1.82,-15.64:17.95 0/0:2:-0.01,-0.61,-5.46:5.96 0/0:1:-0.01,-0.30,-2.07:2.97 0/0:3:-0.00,-0.90,-10.49:9.03 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:2:-0.00,-0.60,-6.99:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.40:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.89:6.02 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:5:-0.01,-1.51,-15.43:14.98 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:2:-0.00,-0.60,-6.34:6.01 0/0:2:-0.00,-0.60,-6.24:6.01 0/0:4:-0.01,-1.21,-12.68:12.02 0/0:2:-0.00,-0.60,-5.86:6.00 0/0:1:-0.00,-0.30,-3.60:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:5:-0.02,-1.51,-15.25:14.95 0/0:3:-0.00,-0.91,-9.16:9.01 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-4.14:5.95 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:2:-0.00,-0.60,-6.46:6.01 0/0:4:-0.00,-1.21,-12.63:12.03 0/0:3:-0.01,-0.91,-8.86:9.00 0/0:1:-0.00,-0.30,-3.50:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.69:6.02 0/0:3:-0.01,-0.91,-7.81:8.98 0/0:4:-0.03,-1.22,-11.53:11.88 0/0:4:-0.01,-1.21,-12.68:12.02 0/1:4:-3.56,-1.21,-9.29:23.53 0/0:2:-0.00,-0.60,-6.04:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.44:6.00 0/0:3:-0.00,-0.90,-10.06:9.02 0/1:4:-2.66,-1.21,-8.64:14.50 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:2:-0.00,-0.60,-6.24:6.01 0/1:4:-3.66,-1.21,-9.46:24.53
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20 85993 . C A 0.05 FDRtranche25.00to35.00+ AB=0.60;AC=4;AF=0.04;AN=98;DB=0;DP=128;Dels=0.00;HRun=2;HaplotypeScore=31.32;MQ=53.70;MQ0=0;OQ=28.43;QD=3.16;SB=-447.96 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.91:6.02 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.00,-0.60,-6.51:6.02 0/0:7:-0.05,-2.13,-20.06:20.76 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:3:-0.00,-0.90,-9.67:9.02 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:2:-0.00,-0.60,-6.81:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.21:6.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-5.56:6.00 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:5:-0.01,-1.51,-14.97:15.02 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:2:-0.00,-0.60,-6.10:6.01 0/0:3:-0.01,-0.91,-8.20:8.97 0/0:4:-0.00,-1.21,-12.73:12.03 0/0:4:-0.05,-1.22,-10.46:11.74 0/0:1:-0.00,-0.30,-3.06:3.01 1/1:1:-2.39,-0.30,-0.01:2.99 0/0:2:-0.00,-0.60,-5.91:6.01 0/0:5:-0.02,-1.51,-13.63:14.97 0/0:3:-0.00,-0.90,-9.62:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:3:-0.00,-0.90,-9.56:9.02 0/0:3:-0.00,-0.90,-10.02:9.02 0/0:2:-0.00,-0.60,-6.71:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.11:6.01 0/0:3:-0.00,-0.90,-9.80:9.02 0/0:3:-0.00,-0.90,-9.42:9.02 0/0:4:-0.01,-1.21,-11.73:12.02 0/1:4:-2.70,-1.21,-9.77:14.90 0/0:2:-0.00,-0.60,-6.30:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-5.20:5.93 0/0:3:-0.00,-0.90,-9.52:9.02 0/0:2:-0.00,-0.60,-5.66:6.01 0/0:2:-0.04,-0.62,-4.56:5.79 0/0:3:-0.00,-0.90,-9.10:9.02 0/1:2:-3.50,-0.60,-2.76:21.54
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20 86005 . C A 196.75 InDel AB=0.54;AC=8;AF=0.10;AN=98;DB=0;DP=120;Dels=0.04;HRun=17;HaplotypeScore=43.84;MQ=51.77;MQ0=0;QD=5.47;SB=-392.24 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.91:6.02 0/0:2:-0.00,-0.60,-6.91:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:3:-0.00,-0.90,-9.30:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:3:-0.01,-0.91,-8.62:8.99 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.71:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.04,-0.31,-1.30:2.78 0/0:1:-0.00,-0.30,-3.26:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:1:-0.00,-0.30,-2.76:3.00 ./.:-1:0,0,0:-1 0/1:8:-2.75,-2.41,-20.89:3.33 0/0:1:-0.00,-0.30,-3.16:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-8.86:9.01 0/1:6:-3.10,-1.81,-15.79:12.89 0/0:2:-0.00,-0.30,-3.16:3.01 0/0:2:-0.00,-0.60,-6.61:6.02 0/1:3:-2.80,-0.91,-6.42:18.91 0/1:4:-3.01,-1.21,-7.52:17.94 0/0:7:-0.01,-2.11,-21.99:21.05 0/0:3:-0.00,-0.91,-9.17:9.02 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/1:3:-4.56,-2.28,-4.66:22.84 0/0:3:-0.02,-0.91,-8.16:8.88 0/1:2:-3.10,-0.60,-3.26:24.92 0/1:6:-9.69,-1.51,-6.62:51.09 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.03,-0.62,-4.71:5.92 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.00,-0.60,-6.11:6.01 0/0:5:-0.01,-1.51,-14.19:15.01 0/0:3:-0.00,-0.60,-6.51:6.02 0/1:2:-3.60,-0.60,-3.30:26.99 0/0:1:-0.00,-0.30,-2.56:3.00 0/0:2:-0.01,-0.60,-5.00:5.97 0/0:4:-0.01,-1.21,-11.67:12.01 0/0:3:-0.03,-0.91,-7.66:8.84 0/0:2:-0.01,-0.60,-5.36:5.99 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:4:-0.00,-0.60,-5.30:6.00
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20 86023 . C A -0.00 FDRtranche25.00to35.00+ AB=0.70;AC=7;AF=0.08;AN=98;DB=0;DP=177;Dels=0.03;HRun=17;HaplotypeScore=114.74;MQ=52.27;MQ0=0;OQ=121.54;QD=5.06;SB=-479.18 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:3:-0.02,-0.92,-8.42:8.95 0/0:2:-0.00,-0.60,-5.96:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:3:-0.00,-0.90,-9.92:9.02 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.01,-0.61,-5.41:5.97 0/0:2:-0.00,-0.60,-5.66:6.00 0/0:2:-0.01,-0.61,-5.10:5.93 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.00,-0.60,-5.96:6.01 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:3:-0.03,-0.92,-7.17:8.94 0/0:2:-0.01,-0.61,-5.56:5.98 0/0:4:-0.03,-1.22,-9.87:11.93 0/0:4:-0.01,-1.21,-11.37:12.00 0/0:2:-0.00,-0.60,-6.50:6.02 0/0:3:-0.00,-0.90,-9.60:9.02 0/1:7:-5.35,-2.15,-11.62:32.03 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:7:-0.01,-1.81,-17.53:18.02 0/0:4:-0.00,-1.21,-12.62:12.03 0/1:6:-3.24,-1.81,-15.67:14.34 0/0:5:-0.00,-1.21,-12.86:12.03 0/0:1:-0.00,-0.30,-2.56:3.00 0/0:2:-0.01,-0.61,-4.86:5.97 0/0:2:-0.01,-0.61,-4.10:5.94 0/0:5:-0.00,-1.51,-15.56:15.03 0/0:3:-0.00,-0.90,-10.26:9.03 0/0:4:-0.00,-1.21,-12.66:12.03 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:6:-0.00,-1.51,-15.96:15.04 0/0:4:-0.01,-1.21,-11.17:12.00 1/1:1:-2.94,-0.30,-0.00:3.01 0/1:2:-2.54,-0.60,-3.26:19.36 0/0:5:-1.39,-1.55,-10.61:1.63 0/0:4:-0.08,-1.25,-8.93:11.76 0/0:4:-0.01,-1.21,-11.52:11.99 0/0:2:-0.00,-0.60,-5.80:6.01 0/0:6:-0.06,-1.83,-15.63:17.73 0/0:1:-0.00,-0.30,-3.26:3.01 1/1:2:-4.68,-0.61,-0.01:5.93 0/0:2:-0.00,-0.60,-6.51:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:6:-0.00,-1.81,-19.37:18.05
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20 86025 . T A 0.06 FDRtranche25.00to35.00+ AB=0.80;AC=7;AF=0.08;AN=98;DB=0;DP=174;Dels=0.01;HRun=1;HaplotypeScore=77.92;MQ=53.20;MQ0=0;OQ=85.41;QD=2.31;SB=-447.05 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:2:-0.00,-0.60,-7.24:6.02 0/0:2:-0.01,-0.61,-5.74:6.00 0/0:1:-0.01,-0.31,-2.04:2.97 0/0:2:-0.00,-0.60,-6.74:6.02 0/0:1:-0.01,-0.31,-2.10:2.97 0/0:2:-0.00,-0.60,-7.18:6.02 0/0:4:-0.01,-1.21,-12.28:12.02 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:3:-0.03,-0.92,-7.22:8.91 0/0:2:-0.01,-0.61,-5.84:6.00 0/0:1:-0.00,-0.30,-3.50:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.14:6.02 0/0:2:-0.00,-0.60,-6.14:6.01 0/0:2:-0.00,-0.60,-5.88:6.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:3:-0.01,-0.91,-8.48:9.00 0/0:5:-0.07,-1.54,-12.06:14.78 0/0:2:-0.00,-0.60,-6.90:6.02 0/1:5:-2.01,-1.53,-11.19:4.84 0/1:5:-3.52,-1.52,-11.24:20.02 0/0:2:-0.03,-0.62,-4.74:5.94 0/0:6:-1.70,-1.83,-16.95:1.33 0/0:4:-0.02,-1.22,-12.38:11.98 0/0:3:-0.00,-0.90,-10.14:9.03 0/1:5:-2.10,-1.52,-13.35:5.84 ./.:-1:0,0,0:-1 0/1:2:-1.64,-0.67,-1.64:9.75 0/0:2:-0.00,-0.60,-6.50:6.02 0/0:3:-0.00,-0.91,-9.90:9.02 0/0:3:-0.00,-0.90,-10.84:9.03 0/0:4:-0.00,-1.21,-13.13:12.03 0/0:1:-0.04,-0.33,-1.70:2.92 0/0:6:-0.00,-1.51,-16.73:15.04 0/0:4:-0.05,-1.24,-9.82:11.88 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:4:-0.00,-0.90,-10.18:9.03 0/1:2:-3.70,-0.60,-3.34:27.37 0/0:2:-0.00,-0.60,-6.74:6.02 0/0:2:-0.00,-0.60,-6.70:6.02 0/0:4:-0.00,-1.21,-12.32:12.02 0/0:1:-0.00,-0.30,-3.44:3.01 1/1:2:-5.20,-0.62,-0.02:5.97 0/0:3:-0.00,-0.90,-10.02:9.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.74:6.02 0/0:6:-0.00,-1.81,-20.51:18.05
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20 86037 . T A 0.00 FDRtranche25.00to35.00+ AB=0.69;AC=3;AF=0.04;AN=98;DB=0;DP=217;Dels=0.00;HRun=3;HaplotypeScore=46.21;MQ=56.30;MQ0=0;OQ=11.84;QD=0.62;SB=-477.48 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.98:6.02 0/0:4:-0.00,-1.21,-14.02:12.04 0/0:2:-0.00,-0.60,-7.14:6.02 ./.:-1:0,0,0:-1 0/1:4:-2.44,-1.21,-10.08:12.34 0/0:2:-0.01,-0.61,-5.64:6.00 0/0:3:-0.00,-0.90,-11.02:9.03 0/0:5:-0.00,-1.51,-17.91:15.05 0/0:1:-0.00,-0.30,-3.54:3.01 0/0:4:-0.01,-1.21,-11.96:12.02 0/0:1:-0.00,-0.30,-3.64:3.01 0/1:2:-2.50,-0.61,-3.34:18.93 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.62:12.02 0/0:2:-0.00,-0.60,-6.64:6.02 0/0:6:-0.03,-1.82,-17.59:17.93 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-6.14:6.01 0/1:5:-3.10,-1.51,-13.12:15.93 0/0:2:-0.00,-0.60,-6.34:6.01 0/0:5:-0.00,-1.51,-16.71:15.03 0/0:9:-2.15,-2.75,-22.56:6.07 0/0:2:-0.00,-0.60,-6.38:6.01 0/0:9:-0.02,-2.72,-28.43:26.99 0/0:3:-0.00,-0.90,-10.08:9.02 0/0:7:-0.01,-2.11,-23.13:21.05 0/0:4:-0.05,-1.24,-10.58:11.91 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:3:-0.05,-0.94,-7.24:8.90 0/0:2:-0.00,-0.60,-6.40:6.01 0/0:3:-0.00,-0.90,-10.18:9.03 0/0:5:-0.01,-1.51,-16.11:15.01 0/0:5:-0.01,-1.51,-15.31:15.02 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:5:-0.00,-1.51,-17.11:15.04 0/0:6:-0.02,-1.82,-16.39:17.96 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-17.20:15.04 0/0:7:-0.05,-2.14,-19.75:20.90 0/0:6:-0.00,-1.81,-19.29:18.04 0/0:6:-0.00,-1.81,-19.63:18.04 0/0:2:-0.00,-0.60,-6.60:6.02 0/0:7:-0.02,-2.12,-20.89:21.02 0/0:2:-0.00,-0.60,-7.18:6.02 ./.:-1:0,0,0:-1 0/0:6:-0.00,-1.81,-19.93:18.05 0/0:2:-0.00,-0.60,-6.74:6.02 0/0:3:-0.00,-0.90,-9.98:9.02 0/0:6:-0.00,-1.81,-20.29:18.05
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20 86792 . C A 0.34 FDRtranche25.00to35.00+ AB=0.67;AC=1;AF=0.01;AN=98;DB=0;DP=168;Dels=0.00;HRun=2;HaplotypeScore=10.70;MQ=56.94;MQ0=0;OQ=16.67;QD=2.78;SB=-530.35 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-9.56:9.02 0/0:2:-0.02,-0.61,-4.70:5.91 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:3:-0.00,-0.90,-9.97:9.02 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:4:-0.00,-1.20,-13.66:12.03 0/0:5:-0.03,-1.52,-15.47:14.94 0/0:5:-0.00,-1.51,-17.43:15.04 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:4:-0.00,-1.21,-14.13:12.04 0/0:3:-0.00,-0.90,-8.86:9.01 0/0:2:-0.00,-0.60,-5.56:6.00 0/0:3:-0.01,-0.91,-9.57:9.00 0/0:3:-0.02,-0.91,-7.80:8.93 0/0:3:-0.00,-0.90,-10.12:9.02 0/0:3:-0.00,-0.90,-10.52:9.03 0/0:2:-0.00,-0.60,-6.31:6.01 0/0:2:-0.00,-0.60,-6.10:6.01 0/1:6:-7.04,-1.81,-12.47:52.30 0/0:2:-0.00,-0.60,-7.00:6.02 0/0:4:-0.00,-1.21,-12.77:12.03 0/0:3:-0.00,-0.90,-9.52:9.02 0/0:5:-0.00,-1.51,-16.49:15.04 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:3:-0.00,-0.90,-9.62:9.02 0/0:1:-0.00,-0.30,-2.20:2.98 0/0:3:-0.00,-0.90,-8.76:9.00 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:5:-0.01,-1.51,-14.22:15.01 0/0:3:-0.01,-0.91,-8.82:9.01 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:8:-0.03,-2.42,-24.64:23.92 0/0:4:-0.00,-1.21,-12.66:12.02 0/0:1:-0.01,-0.30,-2.00:2.97 0/0:2:-0.00,-0.60,-5.56:6.00 0/0:2:-0.00,-0.60,-6.30:6.01 0/0:7:-0.02,-2.12,-21.23:20.99 0/0:6:-0.00,-1.81,-19.02:18.04 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:5:-0.00,-1.51,-15.87:15.04 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-11.46:12.01 0/0:4:-0.01,-1.21,-12.12:12.02 0/0:4:-0.00,-1.21,-12.82:12.03 0/0:4:-0.00,-1.21,-13.47:12.03 0/0:6:-0.01,-1.81,-19.22:18.04
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20 87112 rs34383360 G A 60.64 0 AB=0.54;AC=33;AF=0.41;AN=98;DB=1;DP=131;Dels=0.00;HRun=3;HaplotypeScore=7.75;MQ=57.62;MQ0=0;OQ=1955.68;QD=23.85;SB=-1255.68 GT:DP:GL:GQ 0/1:3:-7.42,-0.91,-2.80:18.92 1/1:3:-11.48,-0.90,-0.00:9.03 0/0:2:-0.01,-0.61,-5.76:6.00 0/0:1:-0.00,-0.30,-3.17:3.01 1/1:3:-10.68,-0.90,-0.00:9.03 0/0:1:-0.00,-0.30,-2.80:3.00 ./.:-1:0,0,0:-1 0/1:3:-7.24,-0.91,-3.00:20.92 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.61,-5.59:6.01 0/1:5:-6.94,-1.51,-8.39:54.29 0/1:2:-3.87,-0.60,-2.80:21.93 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.74:6.02 0/0:1:-0.00,-0.30,-3.27:3.01 1/1:1:-3.66,-0.30,-0.00:3.01 0/0:1:-0.00,-0.30,-3.17:3.01 1/1:6:-21.18,-1.82,-0.01:18.04 0/0:2:-0.01,-0.61,-5.39:5.99 1/1:3:-11.29,-0.90,-0.00:9.03 0/1:5:-7.73,-1.51,-8.59:62.19 0/0:5:-0.02,-1.52,-12.83:14.97 0/0:1:-0.00,-0.30,-2.80:3.00 0/0:7:-0.01,-2.12,-20.63:21.02 0/0:4:-0.03,-1.23,-10.28:11.93 0/1:4:-11.38,-1.21,-2.70:14.90 1/1:5:-18.20,-1.51,-0.00:15.05 0/0:3:-0.01,-0.91,-7.76:8.98 0/0:1:-0.00,-0.30,-3.00:3.01 0/1:6:-14.64,-1.81,-5.87:40.57 1/1:4:-14.95,-1.21,-0.00:12.04 0/0:3:-0.01,-0.91,-8.03:8.98 1/1:2:-6.73,-0.61,-0.01:6.01 0/0:5:-0.01,-1.51,-14.63:15.03 0/1:4:-3.91,-1.23,-5.86:26.81 0/0:1:-0.00,-0.30,-2.80:3.00 ./.:-1:0,0,0:-1 0/1:3:-3.87,-0.91,-5.76:29.65 0/0:2:-0.00,-0.60,-5.66:6.01 0/0:1:-0.01,-0.31,-1.97:2.96 0/1:3:-3.76,-0.91,-5.29:28.54 0/0:1:-0.00,-0.30,-2.80:3.00 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.90:3.00 1/1:1:-3.77,-0.30,-0.00:3.01 0/1:5:-6.94,-1.51,-8.74:54.28 1/1:1:-3.26,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 1/1:3:-11.80,-0.90,-0.00:9.03
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20 87263 . G A 23.48 InDel AB=0.66;AC=4;AF=0.05;AN=98;DB=0;DP=108;Dels=0.00;HRun=9;HaplotypeScore=28.88;MQ=52.11;MQ0=8;QD=2.61;SB=-436.31 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-9.96:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.40:3.01 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-16.35:15.04 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.76:6.00 0/0:2:-0.00,-0.60,-6.96:6.02 0/0:2:-0.00,-0.60,-6.64:6.02 0/0:4:-0.00,-1.21,-13.33:12.03 0/0:3:-0.00,-0.90,-9.13:9.02 0/0:2:-0.00,-0.60,-6.99:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:1:-0.00,-0.30,-2.87:3.00 0/0:1:-0.00,-0.30,-3.37:3.01 0/0:1:-0.00,-0.30,-2.77:3.00 0/0:5:-0.01,-1.51,-14.17:15.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:2:-0.00,-0.60,-6.76:6.02 0/0:3:-0.00,-0.90,-8.81:9.01 0/0:2:-0.00,-0.60,-6.34:6.01 0/0:5:-0.00,-1.51,-16.85:15.04 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:2:-0.00,-0.60,-5.86:6.00 0/0:1:-0.00,-0.30,-3.50:3.01 0/1:5:-2.67,-1.51,-12.53:11.59 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:1:-0.00,-0.30,-3.37:3.01 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:2:-0.00,-0.60,-6.24:6.01 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:3:-0.00,-0.90,-9.83:9.02 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:1:-0.04,-0.32,-1.37:2.81 0/0:4:-0.00,-1.21,-12.60:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.90:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.02,-0.61,-4.34:5.89 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.76:6.02 1/1:1:-3.87,-0.30,-0.00:3.01 0/1:2:-1.86,-0.62,-3.52:12.32
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20 87274 . T A 34.63 InDel AB=0.61;AC=4;AF=0.05;AN=98;DB=0;DP=84;Dels=0.00;HRun=1;HaplotypeScore=15.93;MQ=54.51;MQ0=1;QD=4.95;SB=-380.99 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-7.48:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.64:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.98:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.38:9.03 0/1:2:-1.90,-0.62,-3.02:12.80 0/0:3:-0.00,-0.90,-10.54:9.03 0/0:3:-0.00,-0.90,-11.38:9.03 0/0:3:-0.01,-0.91,-9.34:9.01 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:1:-0.00,-0.30,-2.54:3.00 0/0:2:-0.00,-0.60,-7.18:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.34:6.01 0/0:2:-0.00,-0.60,-6.90:6.02 0/0:4:-0.01,-1.21,-12.43:12.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.00:6.02 0/1:3:-3.20,-0.91,-6.10:22.96 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.74:6.02 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:4:-0.04,-1.22,-11.92:11.87 0/0:1:-0.01,-0.31,-2.10:2.97 0/0:1:-0.00,-0.30,-3.54:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.38:6.01 0/0:4:-0.00,-1.21,-13.23:12.03 1/1:1:-3.80,-0.30,-0.00:3.01 0/0:2:-0.00,-0.60,-7.24:6.02 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:2:-0.01,-0.61,-5.68:5.99 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:2:-0.00,-0.60,-6.94:6.02 0/0:3:-0.00,-0.91,-9.54:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:1:-0.00,-0.30,-3.50:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.60:9.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:1:-0.01,-0.31,-2.10:2.97
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20 87390 . C A 0.01 FDRtranche25.00to35.00+ AB=0.58;AC=4;AF=0.04;AN=98;DB=0;DP=105;Dels=0.00;HRun=1;HaplotypeScore=9.23;MQ=55.48;MQ0=0;OQ=14.44;QD=2.06;SB=-450.92 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-10.02:9.02 0/0:2:-0.00,-0.60,-7.06:6.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:4:-0.00,-1.21,-12.32:12.03 0/0:3:-0.00,-0.90,-10.47:9.03 0/0:2:-0.05,-0.62,-3.76:5.71 0/0:2:-0.00,-0.60,-5.60:6.01 0/0:2:-0.00,-0.60,-6.70:6.02 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:1:-0.00,-0.30,-3.30:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.02,-0.91,-8.26:8.91 0/0:3:-0.00,-0.90,-10.22:9.03 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:1:-0.00,-0.30,-2.86:3.00 0/0:1:-0.00,-0.30,-2.56:3.00 0/0:2:-0.00,-0.60,-5.56:6.01 0/1:3:-2.60,-0.91,-6.42:16.90 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:2:-0.00,-0.60,-6.51:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.31,-1.80:2.94 0/0:5:-0.01,-1.51,-14.46:14.97 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:3:-0.00,-0.91,-8.36:9.01 0/0:3:-0.00,-0.90,-9.06:9.02 0/0:4:-0.00,-1.21,-12.52:12.03 0/0:1:-0.00,-0.30,-2.76:3.00 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.27:12.03 1/1:1:-1.79,-0.32,-0.02:2.94 0/0:1:-0.00,-0.30,-3.16:3.01 0/1:2:-2.50,-0.61,-2.86:18.90 0/0:2:-0.00,-0.60,-5.51:6.00 0/0:3:-0.01,-0.91,-8.62:9.00 0/0:3:-0.00,-0.91,-8.97:9.02 0/0:2:-0.00,-0.60,-6.16:6.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.16:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:2:-0.00,-0.60,-6.76:6.02 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:2:-0.00,-0.60,-6.36:6.01
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20 87414 . C A 0.05 FDRtranche25.00to35.00+ AB=0.69;AC=5;AF=0.06;AN=98;DB=0;DP=105;Dels=0.00;HRun=1;HaplotypeScore=47.34;MQ=55.94;MQ0=0;OQ=26.85;QD=2.44;SB=-410.98 GT:DP:GL:GQ 0/0:3:-0.01,-0.91,-8.52:8.97 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:4:-0.01,-1.21,-11.82:12.01 0/0:2:-0.00,-0.60,-6.31:6.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:5:-0.01,-1.51,-14.77:15.00 0/0:2:-0.00,-0.60,-6.70:6.02 0/0:2:-0.00,-0.60,-6.41:6.02 0/0:1:-0.00,-0.30,-3.10:3.01 1/1:1:-2.49,-0.30,-0.00:3.00 ./.:-1:0,0,0:-1 0/1:3:-2.10,-0.91,-6.57:11.85 0/0:1:-0.00,-0.30,-3.26:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.91:6.01 0/0:5:-0.01,-1.51,-14.93:15.03 0/0:1:-0.01,-0.31,-1.80:2.94 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.11:6.01 0/0:2:-0.02,-0.61,-4.30:5.90 0/0:2:-0.02,-0.61,-4.76:5.93 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:3:-0.00,-0.91,-9.27:9.02 0/0:2:-0.00,-0.60,-6.41:6.02 0/0:1:-0.00,-0.30,-2.86:3.00 0/0:2:-0.00,-0.60,-5.71:6.01 0/0:3:-0.00,-0.90,-9.47:9.02 0/0:2:-0.00,-0.60,-6.81:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.01:6.01 0/1:3:-2.52,-0.91,-4.71:16.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:2:-0.00,-0.60,-6.41:6.01 0/0:6:-0.04,-1.82,-16.93:17.82 0/0:1:-0.00,-0.30,-3.26:3.01 0/1:4:-2.64,-1.22,-7.72:14.18 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.02,-0.61,-4.90:5.91 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:3:-0.01,-0.91,-8.12:8.98 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:1:-0.00,-0.30,-2.60:3.00
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20 87416 rs1935386 A C 330.95 0 AB=0.54;AC=43;AF=0.59;AN=98;DB=1;DP=106;Dels=0.00;HRun=2;HaplotypeScore=20.50;MQ=55.90;MQ0=0;OQ=1720.93;QD=22.06;SB=-1070.25 GT:DP:GL:GQ 1/1:3:-10.02,-0.90,-0.00:9.02 1/1:2:-7.16,-0.60,-0.00:6.02 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:1:-0.00,-0.30,-2.44:2.99 1/1:5:-15.82,-1.51,-0.00:15.03 1/1:2:-6.66,-0.60,-0.00:6.02 0/0:2:-0.00,-0.60,-7.23:6.01 0/1:5:-12.62,-1.51,-3.44:19.35 1/1:2:-6.70,-0.60,-0.00:6.02 0/0:2:-0.00,-0.60,-6.68:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.29:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.93:9.03 1/1:1:-3.06,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:3:-9.27,-0.91,-0.00:9.02 0/0:5:-0.02,-1.51,-14.65:14.96 1/1:2:-5.30,-0.60,-0.00:6.00 ./.:-1:0,0,0:-1 0/1:2:-3.26,-0.60,-3.34:26.55 0/1:2:-3.00,-0.60,-3.60:23.98 1/1:3:-9.12,-0.90,-0.00:9.01 ./.:-1:0,0,0:-1 0/1:2:-3.11,-0.61,-2.00:13.84 1/1:3:-9.77,-0.90,-0.00:9.02 0/0:3:-0.00,-0.90,-10.37:9.03 1/1:1:-2.96,-0.30,-0.00:3.01 0/0:3:-0.00,-0.90,-9.37:9.01 0/1:4:-3.56,-1.21,-9.57:23.54 0/1:2:-3.56,-0.60,-3.64:29.55 ./.:-1:0,0,0:-1 1/1:2:-6.61,-0.60,-0.00:6.02 0/1:3:-3.30,-0.90,-7.09:23.98 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.59:3.01 0/1:2:-3.46,-0.60,-3.34:27.37 0/1:5:-3.26,-1.51,-13.21:17.53 1/1:1:-3.46,-0.30,-0.00:3.01 1/1:3:-8.52,-0.91,-0.01:8.96 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:3:-8.96,-0.90,-0.00:9.02 0/0:2:-0.00,-0.60,-6.93:6.02 1/1:3:-7.32,-0.93,-0.05:8.85 0/0:3:-0.00,-0.90,-10.27:9.03 1/1:1:-1.20,-0.32,-0.05:2.72
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20 88155 . T C 110.65 0 AC=2;AF=0.02;AN=98;DB=0;DP=208;Dels=0.00;HRun=0;HaplotypeScore=39.08;MQ=54.60;MQ0=0;OQ=28.55;QD=14.27;SB=-530.68 GT:DP:GL:GQ 0/0:4:-0.03,-1.23,-11.86:11.99 0/0:3:-0.00,-0.91,-10.48:9.03 0/0:2:-0.00,-0.60,-6.62:6.02 0/0:2:-0.02,-0.62,-5.92:5.99 0/0:4:-0.01,-1.21,-12.45:12.02 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.20,-15.52:12.04 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:3:-0.00,-0.90,-10.88:9.03 0/0:4:-0.01,-1.21,-13.62:12.03 0/0:6:-0.00,-1.81,-22.75:18.06 0/0:6:-0.00,-1.81,-21.67:18.05 0/0:2:-0.00,-0.60,-7.01:6.02 0/0:4:-0.01,-1.22,-12.42:12.01 0/0:4:-0.00,-1.21,-14.23:12.03 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:3:-0.00,-0.90,-11.38:9.03 0/0:3:-0.01,-0.91,-8.79:9.01 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-5.02:5.99 0/0:5:-0.01,-1.52,-16.79:15.03 0/0:9:-0.00,-2.71,-32.55:27.08 0/0:5:-0.00,-1.51,-18.32:15.05 0/0:3:-0.00,-0.90,-10.67:9.03 0/0:5:-0.00,-1.51,-18.40:15.05 0/0:8:-0.03,-2.44,-26.87:24.02 0/0:3:-0.00,-0.90,-10.78:9.03 0/0:2:-0.00,-0.60,-7.31:6.02 0/0:4:-0.00,-1.21,-13.75:12.03 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:6:-0.01,-1.82,-20.75:18.04 0/0:4:-0.00,-1.20,-15.52:12.04 0/0:5:-0.00,-1.51,-18.28:15.04 0/0:5:-0.01,-1.52,-17.78:15.02 0/0:3:-0.03,-0.93,-8.30:8.98 0/0:4:-0.00,-1.21,-14.65:12.04 0/0:1:-0.00,-0.30,-2.96:3.01 0/0:4:-0.00,-1.21,-13.85:12.03 0/0:7:-0.01,-2.11,-24.42:21.06 0/0:5:-0.01,-1.52,-15.62:15.03 0/0:2:-0.01,-0.61,-6.32:6.01 1/1:2:-6.56,-0.60,-0.00:6.02 0/0:7:-0.02,-2.12,-24.42:21.04 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:4:-0.00,-1.21,-14.33:12.04 0/0:5:-0.00,-1.51,-17.69:15.04 0/0:6:-0.00,-1.81,-22.05:18.06 0/0:7:-0.01,-2.11,-24.60:21.06
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20 88827 rs6051504 C A 159.56 0 AB=0.53;AC=17;AF=0.19;AN=98;DB=1;DP=143;Dels=0.00;HRun=3;HaplotypeScore=10.29;MQ=45.38;MQ0=11;OQ=723.96;QD=14.20;SB=-761.11 GT:DP:GL:GQ 0/1:5:-7.69,-1.51,-9.46:61.85 0/0:5:-0.01,-1.51,-14.57:15.01 0/0:2:-0.00,-0.60,-6.71:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-8.82:9.01 1/1:1:-3.19,-0.30,-0.00:3.01 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:3:-0.01,-0.91,-8.16:8.99 ./.:-1:0,0,0:-1 0/0:9:-0.01,-2.72,-26.35:27.04 0/1:5:-11.17,-1.51,-6.60:50.96 0/0:4:-0.02,-1.21,-10.66:11.95 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.82:12.03 0/1:4:-8.78,-1.22,-3.23:20.06 0/0:2:-0.00,-0.60,-6.80:6.02 0/0:2:-0.00,-0.60,-6.50:6.02 0/0:1:-0.00,-0.30,-3.10:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-9.17:9.02 0/0:2:-0.00,-0.60,-6.31:6.01 0/0:3:-0.01,-0.91,-7.90:8.99 1/1:3:-10.63,-0.90,-0.00:9.03 0/1:3:-3.44,-0.91,-6.01:25.37 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.26:3.01 0/1:3:-6.43,-0.90,-3.30:23.98 1/1:1:-3.44,-0.30,-0.00:3.01 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:3:-0.00,-0.90,-9.46:9.02 0/1:3:-3.70,-0.90,-6.50:27.92 0/0:1:-0.00,-0.30,-3.20:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:4:-0.00,-1.21,-11.96:12.02 0/0:3:-0.00,-0.90,-9.52:9.02 0/1:6:-10.43,-1.81,-8.86:70.51 0/1:4:-7.19,-1.21,-5.10:38.96 0/0:3:-0.00,-0.90,-9.32:9.02 ./.:-1:0,0,0:-1 0/1:4:-6.48,-1.21,-6.16:49.53 0/1:2:-3.54,-0.60,-3.36:27.55 0/1:3:-3.44,-0.90,-6.50:25.36 0/0:2:-0.00,-0.60,-5.96:6.01 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:3:-0.00,-0.90,-9.32:9.02
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20 88884 . C A 0.01 FDRtranche25.00to35.00+ AB=0.52;AC=7;AF=0.07;AN=98;DB=0;DP=152;Dels=0.00;HRun=4;HaplotypeScore=27.74;MQ=56.01;MQ0=1;OQ=46.29;QD=2.01;SB=-455.94 GT:DP:GL:GQ 0/0:3:-0.01,-0.91,-8.26:8.99 0/0:1:-0.00,-0.30,-2.30:2.99 0/1:3:-2.40,-0.91,-6.92:14.88 0/0:2:-0.00,-0.60,-6.91:6.02 0/0:5:-0.00,-1.51,-15.62:15.03 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.82:9.03 0/0:3:-0.01,-0.91,-8.42:8.96 0/0:1:-0.00,-0.30,-2.70:3.00 0/1:4:-2.00,-1.21,-10.53:7.82 0/0:4:-0.00,-1.20,-14.33:12.04 0/0:3:-0.00,-0.91,-8.66:9.01 0/0:1:-0.00,-0.30,-3.30:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:4:-0.00,-1.21,-13.23:12.03 1/1:1:-2.89,-0.30,-0.00:3.00 ./.:-1:0,0,0:-1 0/0:1:-0.02,-0.31,-1.60:2.90 0/0:5:-0.01,-1.51,-15.02:15.02 0/0:5:-0.01,-1.51,-16.19:15.03 0/0:3:-0.00,-0.90,-9.77:9.02 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:4:-0.00,-1.21,-13.13:12.03 0/1:2:-2.50,-0.61,-3.36:18.90 0/0:4:-0.01,-1.21,-11.40:12.01 0/0:7:-0.02,-2.12,-20.93:21.00 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:3:-0.00,-0.90,-10.47:9.03 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:4:-0.00,-1.21,-13.33:12.03 0/0:2:-0.00,-0.60,-6.10:6.01 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:3:-0.00,-0.90,-9.22:9.02 0/0:1:-0.01,-0.30,-2.10:2.98 0/0:2:-0.00,-0.60,-6.41:6.02 0/0:3:-0.01,-0.91,-8.72:8.96 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:5:-0.01,-1.51,-14.52:15.01 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:3:-0.00,-0.90,-10.02:9.02 0/0:2:-0.00,-0.60,-6.41:6.02 0/0:2:-0.00,-0.60,-6.61:6.02 0/1:2:-2.10,-0.61,-3.01:14.86 0/1:8:-2.56,-2.43,-18.88:1.22
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20 88924 . A T 71.83 0 AC=2;AF=0.02;AN=98;DB=0;DP=136;Dels=0.00;HRun=1;HaplotypeScore=15.09;MQ=56.04;MQ0=1;OQ=60.79;QD=20.26;SB=-492.39 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-8.00:6.02 0/0:2:-0.00,-0.60,-7.74:6.02 0/0:3:-0.00,-0.90,-9.78:9.02 0/0:1:-0.00,-0.30,-3.90:3.01 0/0:6:-0.01,-1.81,-19.91:18.04 ./.:-1:0,0,0:-1 0/0:5:-0.02,-1.52,-15.37:15.01 0/0:1:-0.00,-0.30,-3.90:3.01 0/0:1:-0.00,-0.30,-3.64:3.01 0/0:6:-0.00,-1.81,-20.61:18.05 0/0:3:-0.01,-0.91,-8.84:9.01 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-9.50:9.01 0/0:2:-0.00,-0.60,-7.44:6.02 0/0:5:-0.00,-1.51,-17.81:15.05 0/0:4:-0.00,-1.21,-14.49:12.04 0/0:3:-0.00,-0.90,-10.32:9.03 0/0:4:-0.00,-1.21,-14.39:12.04 0/0:4:-0.00,-1.21,-12.42:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.64:3.01 0/0:3:-0.00,-0.90,-10.02:9.02 0/0:3:-0.00,-0.90,-10.48:9.03 0/0:2:-0.00,-0.60,-7.14:6.02 0/0:5:-0.00,-1.51,-16.91:15.04 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.30:9.03 0/0:2:-0.00,-0.60,-6.84:6.02 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:2:-0.00,-0.60,-7.14:6.02 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-18.11:15.05 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:6:-0.01,-1.81,-19.71:18.00 0/0:4:-0.00,-1.21,-13.33:12.03 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:2:-0.00,-0.60,-7.14:6.02 0/0:2:-0.00,-0.60,-7.40:6.02 0/0:3:-0.00,-0.90,-10.64:9.03 0/0:4:-0.00,-1.21,-13.83:12.03 1/1:3:-9.84,-0.91,-0.00:9.02 0/0:3:-0.00,-0.90,-10.38:9.03 0/0:6:-0.00,-1.81,-20.71:18.05 ./.:-1:0,0,0:-1 0/0:2:-0.01,-0.61,-4.98:5.95 0/0:3:-0.01,-0.91,-9.14:9.02 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:1:-0.00,-0.30,-3.24:3.01 0/0:1:-0.00,-0.30,-3.70:3.01
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20 89239 . C A 0.00 FDRtranche25.00to35.00+ AB=0.55;AC=3;AF=0.05;AN=98;DB=0;DP=119;Dels=0.00;HRun=5;HaplotypeScore=7.31;MQ=35.87;MQ0=9;OQ=21.46;QD=1.19;SB=-351.96 GT:DP:GL:GQ 0/0:3:-0.00,-0.90,-9.90:9.02 0/0:2:-0.00,-0.60,-6.51:6.01 0/0:3:-0.04,-0.93,-8.42:8.90 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-6.01:6.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:1:-0.00,-0.30,-3.00:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:3:-0.04,-0.92,-7.16:8.78 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.22:12.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-8.56:9.01 0/0:2:-0.00,-0.60,-5.80:6.01 ./.:-1:0,0,0:-1 0/0:4:-0.03,-1.22,-9.66:11.87 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:2:-0.00,-0.60,-6.51:6.02 0/1:2:-2.00,-0.61,-3.27:13.84 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:5:-1.51,-1.54,-11.32:0.36 0/0:3:-0.00,-0.91,-8.72:9.01 ./.:-1:0,0,0:-1 0/1:2:-3.30,-0.60,-3.26:26.55 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:2:-0.01,-0.60,-5.40:5.98 0/0:1:-0.01,-0.30,-2.36:2.99 0/0:3:-0.00,-0.90,-9.56:9.02 0/0:4:-0.00,-1.21,-13.13:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.01,-0.60,-5.16:5.98 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:2:-0.00,-0.60,-6.41:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.86:3.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:2:-0.04,-0.62,-4.36:5.79 0/0:3:-0.00,-0.90,-9.92:9.02 ./.:-1:0,0,0:-1 0/1:3:-2.44,-0.92,-4.36:15.18
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20 89826 . A G 0.14 FDRtranche25.00to35.00+ AB=0.60;AC=1;AF=0.01;AN=98;DB=0;DP=214;Dels=0.00;HRun=1;HaplotypeScore=22.58;MQ=54.01;MQ0=0;OQ=10.28;QD=2.06;SB=-509.92 GT:DP:GL:GQ 0/0:5:-0.00,-1.51,-19.82:15.05 0/0:7:-0.00,-2.11,-28.42:21.07 0/0:5:-0.00,-1.51,-18.82:15.04 0/0:2:-0.00,-0.60,-7.43:6.02 0/0:6:-0.00,-1.81,-22.07:18.06 0/0:6:-0.00,-1.81,-22.78:18.06 0/0:3:-0.00,-0.90,-11.90:9.03 0/0:6:-0.00,-1.81,-22.06:18.05 0/1:5:-6.07,-1.51,-11.89:45.58 0/0:6:-0.00,-1.81,-23.16:18.06 0/0:5:-0.01,-1.51,-16.81:15.04 0/0:2:-0.00,-0.60,-7.72:6.02 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-19.81:15.05 0/0:5:-0.00,-1.51,-19.81:15.05 0/0:3:-0.00,-0.90,-11.68:9.03 0/0:4:-0.00,-1.21,-15.16:12.04 0/0:4:-0.02,-1.22,-13.66:12.01 0/0:2:-0.00,-0.60,-7.73:6.02 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:4:-0.00,-1.20,-16.06:12.04 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-18.99:15.05 0/0:5:-0.00,-1.51,-19.50:15.05 0/0:3:-0.00,-0.90,-10.97:9.03 0/0:6:-0.00,-1.81,-23.27:18.06 0/0:8:-0.01,-2.41,-29.71:24.07 0/0:5:-0.00,-1.51,-18.39:15.05 0/0:6:-0.00,-1.81,-23.09:18.06 0/0:4:-0.00,-1.21,-14.33:12.04 0/0:6:-0.00,-1.81,-23.38:18.06 0/0:5:-1.60,-3.07,-18.56:14.71 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:2:-0.04,-0.63,-5.11:5.94 0/0:8:-0.00,-2.41,-30.01:24.08 0/0:3:-0.00,-0.90,-11.68:9.03 0/0:4:-0.00,-1.21,-15.47:12.04 0/0:5:-0.00,-1.51,-19.42:15.05 0/0:3:-0.00,-0.90,-11.29:9.03 0/0:4:-0.01,-1.21,-13.86:12.02 0/0:1:-0.00,-0.30,-3.76:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.99:9.03 0/0:3:-0.00,-0.90,-11.89:9.03 0/0:3:-0.00,-0.90,-10.98:9.03 0/0:7:-0.00,-2.11,-25.75:21.06 0/0:6:-0.00,-1.81,-22.76:18.06 0/0:1:-0.00,-0.30,-3.67:3.01 0/0:7:-0.01,-2.12,-24.33:21.05
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20 90008 rs1858595 C A 51.12 0 AB=0.57;AC=25;AF=0.29;AN=98;DB=1;DP=187;Dels=0.00;HRun=3;HaplotypeScore=9.78;MQ=37.81;MQ0=8;OQ=1456.42;QD=17.55;SB=-1158.63 GT:DP:GL:GQ 0/0:5:-0.00,-1.51,-16.47:15.04 0/0:4:-0.00,-1.20,-14.22:12.04 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:5:-0.02,-1.52,-14.47:14.99 ./.:-1:0,0,0:-1 1/1:8:-29.03,-2.41,-0.00:24.07 0/1:7:-6.04,-2.11,-16.58:39.27 0/0:5:-0.00,-1.51,-16.72:15.04 1/1:4:-13.31,-1.21,-0.00:12.03 0/0:5:-0.00,-1.51,-17.62:15.04 0/1:3:-7.29,-0.90,-3.30:23.98 1/1:2:-6.83,-0.60,-0.00:6.02 1/1:1:-3.79,-0.30,-0.00:3.01 0/1:3:-3.74,-0.90,-6.96:28.36 0/0:3:-0.00,-0.90,-10.06:9.02 0/1:3:-3.70,-0.90,-7.06:27.92 0/0:3:-0.05,-0.92,-7.26:8.73 0/1:4:-6.83,-1.20,-6.60:53.97 0/0:4:-0.00,-1.21,-12.16:12.01 0/0:2:-0.00,-0.60,-5.71:6.01 0/0:7:-0.01,-2.12,-20.43:21.01 0/1:7:-3.50,-2.11,-19.13:13.90 0/0:1:-0.00,-0.30,-3.30:3.01 0/1:6:-14.08,-1.81,-5.06:32.47 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:2:-0.00,-0.60,-6.76:6.02 0/1:6:-7.09,-1.81,-12.83:52.84 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.30:2.99 0/1:6:-13.53,-1.81,-4.70:28.89 0/1:4:-3.92,-1.21,-8.20:27.05 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-9.36:9.01 0/0:6:-0.02,-1.81,-17.82:17.94 1/1:4:-13.51,-1.20,-0.00:12.03 1/1:4:-13.67,-1.20,-0.00:12.03 0/0:4:-0.02,-1.21,-11.46:11.98 0/1:5:-3.50,-1.51,-11.92:19.91 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:5:-0.02,-1.52,-15.03:14.99 1/1:1:-3.59,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.26:9.02 0/0:3:-0.02,-0.92,-7.72:8.94 0/0:3:-0.00,-0.90,-9.86:9.02 0/0:6:-0.00,-1.81,-19.19:18.04 0/0:4:-0.00,-1.21,-12.96:12.03
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20 90378 . C T 0.07 FDRtranche25.00to35.00+ AB=0.50;AC=2;AF=0.02;AN=98;DB=0;DP=116;Dels=0.00;HRun=1;HaplotypeScore=8.56;MQ=58.21;MQ0=0;OQ=13.11;QD=3.28;SB=-477.00 GT:DP:GL:GQ 0/0:1:-0.01,-0.31,-2.30:2.99 0/0:3:-0.00,-0.90,-10.01:9.02 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:6:-0.00,-1.81,-19.67:18.05 0/0:1:-0.00,-0.30,-3.30:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:2:-0.00,-0.60,-6.14:6.01 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:3:-0.00,-0.90,-9.63:9.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:3:-0.00,-0.90,-9.46:9.02 0/0:1:-0.00,-0.30,-2.47:3.00 0/0:3:-0.00,-0.90,-10.06:9.02 0/1:2:-2.36,-0.61,-2.88:17.47 0/0:2:-0.00,-0.60,-6.14:6.01 0/0:3:-0.00,-0.90,-10.19:9.03 0/0:4:-0.00,-1.21,-13.00:12.03 0/0:6:-0.02,-1.82,-16.74:17.94 0/0:1:-0.00,-0.30,-3.07:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:3:-0.01,-0.91,-8.21:8.99 0/0:2:-0.00,-0.60,-6.79:6.02 0/0:2:-0.00,-0.60,-5.46:6.00 0/0:2:-0.00,-0.60,-6.56:6.01 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:4:-0.00,-1.21,-12.80:12.03 0/0:3:-0.00,-0.90,-10.09:9.02 0/1:2:-3.96,-0.60,-3.10:24.93 0/0:5:-0.01,-1.51,-14.47:15.01 0/0:2:-0.00,-0.60,-5.64:6.00 0/0:2:-0.00,-0.60,-5.69:6.01 0/0:4:-0.01,-1.21,-12.48:12.02 0/0:2:-0.01,-0.61,-5.26:6.00 0/0:2:-0.00,-0.60,-6.14:6.01 0/0:1:-0.00,-0.30,-2.70:3.00 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:2:-0.00,-0.60,-6.34:6.01 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:3:-0.00,-0.90,-8.91:9.02 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:7:-0.01,-2.11,-21.31:21.04
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20 90689 . C A 0.02 FDRtranche25.00to35.00+ AB=0.67;AC=5;AF=0.05;AN=98;DB=0;DP=177;Dels=0.00;HRun=2;HaplotypeScore=47.52;MQ=57.93;MQ0=0;OQ=13.75;QD=2.75;SB=-494.19 GT:DP:GL:GQ 0/0:5:-1.51,-1.54,-11.66:0.31 0/0:3:-0.00,-0.91,-9.02:9.01 0/0:4:-0.00,-1.21,-13.22:12.03 0/0:1:-0.00,-0.30,-3.46:3.01 0/1:3:-2.80,-0.91,-5.16:18.95 0/0:2:-0.00,-0.60,-4.90:5.99 1/1:1:-1.79,-0.32,-0.02:2.94 0/0:3:-0.05,-0.92,-6.20:8.71 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.91:6.02 0/0:5:-0.00,-1.51,-16.32:15.03 0/0:1:-0.01,-0.31,-2.06:2.97 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:6:-0.01,-1.81,-18.66:18.02 0/0:3:-0.00,-0.90,-10.42:9.03 0/0:6:-0.01,-1.81,-17.06:18.00 0/0:5:-0.01,-1.51,-15.62:15.02 0/0:3:-0.04,-0.93,-7.92:8.89 0/0:4:-0.00,-1.21,-12.26:12.02 0/0:6:-0.01,-1.81,-18.32:18.03 0/0:3:-0.00,-0.90,-9.10:9.02 0/0:8:-3.49,-5.49,-24.27:19.99 0/0:2:-0.01,-0.61,-4.30:5.96 0/0:2:-0.00,-0.60,-6.51:6.02 0/0:4:-0.00,-1.21,-13.12:12.03 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.02,-0.61,-4.00:5.86 0/0:4:-0.01,-1.21,-10.76:11.99 0/0:5:-0.00,-1.51,-15.87:15.04 0/0:4:-0.02,-1.21,-10.22:11.95 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:3:-0.00,-0.90,-9.62:9.02 ./.:-1:0,0,0:-1 0/0:3:-0.03,-0.91,-7.72:8.84 0/0:2:-0.01,-0.60,-5.46:5.98 1/1:1:-1.59,-0.33,-0.04:2.89 0/0:5:-0.00,-1.51,-15.82:15.03 0/0:3:-0.00,-0.90,-9.97:9.02 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:1:-0.01,-0.31,-1.80:2.94 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:3:-0.00,-0.90,-9.62:9.02 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:5:-0.01,-1.51,-14.76:15.02 0/0:8:-0.06,-2.43,-21.16:23.70
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20 91707 rs8122066 C T 12375.94 0 AB=0.56;AC=13;AF=0.14;AN=98;DB=1;DP=154;Dels=0.00;HRun=0;HaplotypeScore=18.83;MQ=58.27;MQ0=0;OQ=370.00;QD=11.94;SB=-607.67 GT:DP:GL:GQ 0/0:5:-0.00,-1.51,-17.35:15.03 0/0:3:-0.00,-0.90,-10.56:9.03 0/0:3:-0.00,-0.90,-9.96:9.02 0/0:2:-0.00,-0.60,-6.59:6.01 0/0:3:-0.00,-0.90,-8.93:9.01 0/0:2:-0.00,-0.60,-7.49:6.02 0/1:3:-3.67,-0.90,-6.87:27.64 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-17.43:15.04 0/0:3:-0.00,-0.90,-10.46:9.03 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:3:-0.00,-0.90,-10.79:9.03 0/0:1:-0.00,-0.30,-3.60:3.01 1/1:1:-3.87,-0.30,-0.00:3.01 0/1:6:-10.59,-1.81,-9.89:80.82 0/0:1:-0.00,-0.30,-2.47:3.00 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-13.06:12.03 1/1:2:-7.41,-0.60,-0.00:6.02 0/1:8:-18.92,-16.21,-24.22:27.06 0/0:5:-0.00,-1.51,-15.17:15.03 0/0:5:-0.01,-1.51,-14.17:14.99 0/0:2:-0.00,-0.60,-7.19:6.02 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:2:-0.00,-0.60,-7.19:6.02 ./.:-1:0,0,0:-1 0/0:6:-0.01,-1.81,-18.99:18.03 0/0:4:-0.00,-1.21,-13.76:12.03 0/0:3:-0.00,-0.90,-9.83:9.02 0/0:4:-0.00,-1.21,-13.13:12.03 0/0:3:-0.00,-0.90,-10.59:9.03 0/0:2:-0.02,-0.61,-5.06:5.96 0/0:5:-0.01,-1.51,-14.87:15.02 0/0:2:-0.00,-0.60,-5.84:6.01 ./.:-1:0,0,0:-1 0/1:3:-5.63,-0.92,-3.08:21.68 0/0:6:-0.00,-1.81,-20.32:18.05 ./.:-1:0,0,0:-1 0/1:3:-6.80,-6.47,-8.48:3.21 0/0:2:-0.00,-0.60,-6.36:6.01 1/1:1:-3.76,-0.30,-0.00:3.01 1/1:2:-7.03,-0.60,-0.00:6.02 0/0:1:-0.00,-0.30,-2.67:3.00 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-16.73:15.04 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-13.56:12.03 0/0:9:-0.00,-2.71,-30.98:27.08
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20 91716 . C T 46.04 0 AB=0.41;AC=2;AF=0.02;AN=98;DB=0;DP=148;Dels=0.00;HRun=1;HaplotypeScore=28.56;MQ=57.76;MQ0=0;OQ=155.25;QD=15.53;SB=-528.29 GT:DP:GL:GQ 0/0:6:-0.01,-1.81,-19.82:18.04 0/0:3:-0.00,-0.90,-10.03:9.02 0/0:4:-0.03,-1.22,-10.93:11.94 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:2:-0.00,-0.60,-6.96:6.02 0/0:3:-0.00,-0.90,-10.46:9.03 0/0:2:-0.00,-0.60,-6.66:6.02 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-16.10:15.03 0/0:3:-0.01,-0.91,-8.86:9.01 0/0:3:-0.01,-0.91,-7.56:8.98 0/0:4:-0.00,-1.21,-13.58:12.03 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-6.96:6.02 0/0:6:-0.01,-1.81,-19.62:18.04 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.96:6.01 0/0:1:-0.00,-0.30,-3.07:3.01 0/1:7:-15.32,-2.11,-9.83:77.25 0/0:4:-0.04,-1.22,-10.40:11.83 0/0:5:-0.00,-1.51,-15.67:15.03 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:1:-0.01,-0.31,-1.97:2.96 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:3:-0.00,-0.90,-9.23:9.01 0/0:4:-0.01,-1.21,-11.73:12.00 0/0:2:-0.00,-0.60,-6.34:6.01 0/0:4:-0.00,-1.21,-13.06:12.03 0/0:2:-0.00,-0.60,-7.29:6.02 0/0:2:-0.00,-0.60,-6.89:6.02 0/0:5:-0.01,-1.51,-14.47:14.97 0/0:2:-0.00,-0.60,-6.24:6.01 0/0:2:-0.00,-0.60,-6.34:6.01 0/0:2:-0.00,-0.60,-6.89:6.02 0/0:3:-0.00,-0.90,-10.29:9.03 0/0:2:-0.00,-0.60,-5.94:6.01 0/1:3:-7.03,-0.90,-3.17:22.65 0/0:1:-0.00,-0.30,-3.17:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:2:-0.00,-0.60,-5.84:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:6:-0.00,-1.81,-20.09:18.05 0/0:9:-0.00,-2.71,-29.60:27.07
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20 92177 . C A 0.49 FDRtranche25.00to35.00+ AB=0.67;AC=2;AF=0.02;AN=98;DB=0;DP=121;Dels=0.00;HRun=0;HaplotypeScore=10.28;MQ=58.39;MQ0=0;OQ=20.79;QD=2.31;SB=-488.94 GT:DP:GL:GQ 0/0:4:-0.00,-1.21,-12.77:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:2:-0.00,-0.60,-7.21:6.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:4:-0.00,-1.21,-13.07:12.03 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:3:-0.00,-0.90,-9.66:9.02 0/0:4:-0.01,-1.21,-11.77:12.00 0/0:4:-0.00,-1.21,-13.02:12.03 0/0:4:-0.01,-1.21,-11.72:12.00 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:4:-0.00,-1.21,-13.07:12.03 0/0:1:-0.00,-0.30,-2.46:3.00 0/1:6:-6.44,-1.81,-12.47:46.28 0/0:6:-0.01,-1.81,-18.67:18.03 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:3:-0.00,-0.90,-9.52:9.02 0/0:4:-0.00,-1.21,-12.10:12.02 0/0:2:-0.00,-0.60,-6.10:6.01 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:2:-0.00,-0.60,-6.51:6.02 0/0:1:-0.00,-0.30,-3.26:3.01 0/1:3:-2.14,-0.91,-6.02:12.34 0/0:2:-0.01,-0.61,-5.71:6.00 0/0:5:-0.02,-1.51,-14.12:14.99 0/0:2:-0.00,-0.60,-5.60:6.01 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:3:-0.02,-0.92,-8.12:8.96 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:3:-0.01,-0.91,-8.52:9.00 0/0:4:-0.00,-1.21,-12.72:12.03 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:3:-0.00,-0.90,-9.26:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:3:-0.00,-0.90,-9.32:9.02 0/0:2:-0.00,-0.61,-5.66:6.00 0/0:4:-0.01,-1.21,-11.97:12.02 0/0:4:-0.00,-1.21,-13.07:12.03
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20 92366 rs13039134 A G 1795.08 0 AB=0.44;AC=33;AF=0.41;AN=98;DB=1;DP=151;Dels=0.00;HRun=0;HaplotypeScore=5.93;MQ=58.70;MQ0=0;OQ=1828.71;QD=20.32;SB=-1259.49 GT:DP:GL:GQ 1/1:3:-9.13,-0.91,-0.00:9.01 1/1:2:-6.96,-0.60,-0.00:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.43:6.02 1/1:3:-9.53,-0.90,-0.00:9.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-4.16:3.01 0/1:2:-3.70,-0.60,-2.96:23.52 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:2:-0.04,-0.63,-5.62:5.96 0/1:6:-13.83,-1.81,-7.91:61.05 0/0:4:-0.00,-1.21,-14.23:12.04 0/1:4:-5.14,-1.21,-7.03:39.31 1/1:2:-7.26,-0.60,-0.00:6.02 0/0:2:-0.01,-0.61,-6.33:6.01 0/1:6:-6.47,-1.81,-14.74:46.58 0/1:2:-3.90,-0.60,-3.66:30.53 1/1:3:-7.63,-0.91,-0.01:8.99 0/0:2:-0.00,-0.60,-7.13:6.02 1/1:5:-15.70,-1.51,-0.00:15.04 0/1:4:-9.11,-1.21,-3.77:25.64 0/0:7:-0.00,-2.11,-25.26:21.06 0/1:4:-6.27,-1.21,-7.41:50.60 0/0:5:-0.00,-1.51,-17.99:15.04 0/0:2:-0.00,-0.60,-7.23:6.02 ./.:-1:0,0,0:-1 1/1:3:-8.53,-0.91,-0.01:8.99 0/0:4:-0.02,-1.22,-12.45:12.01 0/0:5:-0.00,-1.51,-18.30:15.05 0/1:3:-6.14,-0.90,-3.76:28.53 0/1:3:-6.04,-0.91,-2.87:19.62 0/1:4:-3.80,-1.21,-10.38:25.93 0/1:6:-12.73,-1.81,-7.33:55.17 0/0:2:-0.00,-0.60,-7.73:6.02 0/1:3:-6.54,-0.91,-3.07:21.63 0/0:4:-0.00,-1.21,-14.23:12.03 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:7:-0.00,-2.11,-26.01:21.07 0/0:2:-0.00,-0.60,-7.32:6.02 0/0:4:-0.00,-1.21,-14.95:12.04 0/0:2:-0.00,-0.60,-7.13:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.66:3.01 ./.:-1:0,0,0:-1 0/1:4:-5.74,-1.21,-7.31:45.32 1/1:1:-2.20,-0.31,-0.01:2.98 0/1:4:-9.83,-1.21,-3.86:26.52 0/1:2:-3.60,-0.60,-2.96:23.52 1/1:3:-9.73,-0.90,-0.00:9.02
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20 92527 rs1418260 A G 683.55 0 AB=0.42;AC=74;AF=0.87;AN=98;DB=1;DP=165;Dels=0.00;HRun=0;HaplotypeScore=9.28;MQ=56.71;MQ0=0;OQ=4356.40;QD=27.23;SB=-2041.24 GT:DP:GL:GQ 1/1:3:-8.93,-0.91,-0.00:9.02 1/1:4:-12.03,-1.21,-0.01:12.02 0/1:2:-2.50,-0.61,-3.97:18.91 1/1:2:-6.16,-0.60,-0.00:6.01 1/1:3:-8.79,-0.91,-0.00:9.02 ./.:-1:0,0,0:-1 1/1:2:-6.26,-0.60,-0.00:6.01 1/1:1:-2.97,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 1/1:4:-10.13,-1.23,-0.03:11.93 1/1:2:-6.16,-0.60,-0.00:6.01 ./.:-1:0,0,0:-1 1/1:2:-4.76,-0.63,-0.04:5.90 1/1:1:-3.00,-0.30,-0.00:3.01 1/1:5:-14.90,-1.51,-0.01:15.03 1/1:3:-8.43,-0.91,-0.01:9.01 1/1:2:-5.66,-0.61,-0.00:6.00 1/1:3:-8.43,-0.91,-0.01:9.01 0/1:5:-5.44,-1.51,-11.18:39.31 1/1:4:-10.53,-1.21,-0.01:11.99 0/0:2:-0.00,-0.60,-7.92:6.02 0/1:11:-18.45,-3.33,-14.06:99.00 1/1:8:-20.39,-2.44,-0.06:23.89 0/0:2:-0.00,-0.60,-7.82:6.02 1/1:4:-11.07,-1.21,-0.01:12.00 1/1:1:-2.97,-0.30,-0.00:3.01 1/1:3:-7.56,-0.91,-0.02:8.97 1/1:5:-14.20,-1.51,-0.01:15.00 1/1:5:-14.73,-1.51,-0.01:15.03 0/0:1:-0.00,-0.30,-3.76:3.01 1/1:6:-16.67,-1.81,-0.01:18.01 1/1:5:-14.47,-1.51,-0.01:15.01 1/1:1:-3.17,-0.30,-0.00:3.01 1/1:2:-5.56,-0.61,-0.01:6.00 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:2:-5.24,-0.60,-0.00:6.00 0/1:3:-5.44,-0.91,-2.46:15.50 1/1:4:-11.13,-1.21,-0.01:12.01 1/1:5:-12.70,-1.53,-0.04:14.91 1/1:7:-18.09,-2.14,-0.05:20.90 1/1:2:-5.56,-0.61,-0.01:6.00 1/1:1:-3.30,-0.30,-0.00:3.01 1/1:1:-2.60,-0.30,-0.00:3.00 ./.:-1:0,0,0:-1 0/1:5:-8.91,-1.51,-7.54:60.29 1/1:3:-7.53,-0.93,-0.05:8.87 0/1:6:-11.40,-1.81,-7.54:57.30 1/1:4:-10.36,-1.22,-0.02:11.97
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20 92639 . G T 3.99 FDRtranche12.50to25.00 AB=0.33;AC=1;AF=0.01;AN=98;DB=0;DP=196;Dels=0.00;HRun=0;HaplotypeScore=15.05;MQ=56.73;MQ0=0;OQ=10.39;QD=3.46;SB=-507.00 GT:DP:GL:GQ 0/0:4:-0.00,-1.21,-12.42:12.02 0/0:2:-0.00,-0.60,-6.70:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:4:-0.00,-1.20,-13.72:12.03 0/0:5:-0.00,-1.51,-16.92:15.04 0/0:4:-0.00,-1.21,-12.86:12.03 0/0:4:-0.00,-1.21,-12.60:12.03 0/0:7:-0.01,-2.12,-20.47:21.02 0/0:3:-0.00,-0.91,-8.82:9.02 0/0:5:-0.00,-1.51,-15.62:15.03 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:4:-0.00,-1.21,-11.66:12.01 0/0:2:-0.00,-0.60,-7.01:6.02 0/0:4:-0.00,-1.21,-12.56:12.03 0/0:2:-0.00,-0.60,-6.40:6.02 0/0:3:-0.00,-0.90,-9.82:9.02 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:6:-0.01,-1.81,-17.67:17.98 0/0:5:-0.00,-1.51,-16.32:15.04 0/0:3:-0.00,-0.90,-9.26:9.02 0/0:3:-0.00,-0.90,-9.86:9.02 0/0:4:-0.00,-1.21,-11.86:12.02 0/0:3:-0.00,-0.90,-9.06:9.01 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:6:-0.01,-1.81,-18.72:18.03 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:3:-0.00,-0.90,-8.76:9.00 0/0:6:-0.01,-1.81,-18.86:18.02 0/0:4:-0.00,-1.21,-12.76:12.03 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:6:-0.01,-1.81,-16.52:18.01 0/0:5:-0.00,-1.51,-15.60:15.03 0/0:7:-0.00,-2.11,-21.87:21.05 0/0:7:-0.00,-2.11,-22.33:21.05 0/0:4:-0.00,-1.21,-12.66:12.03 0/0:4:-0.00,-1.21,-12.06:12.02 0/0:5:-0.00,-1.51,-16.53:15.04 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:2:-0.00,-0.60,-5.50:6.00 0/1:3:-5.49,-0.92,-3.08:21.61 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:5:-0.01,-1.51,-14.52:15.02 0/0:2:-0.00,-0.60,-6.20:6.01 0/0:6:-0.00,-1.81,-19.57:18.05 0/0:9:-0.03,-2.72,-26.66:26.89
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20 92680 . T C 0.01 FDRtranche25.00to35.00+ AB=0.60;AC=6;AF=0.06;AN=98;DB=0;DP=193;Dels=0.00;HRun=2;HaplotypeScore=67.58;MQ=53.81;MQ0=0;OQ=34.21;QD=1.49;SB=-471.99 GT:DP:GL:GQ 0/0:5:-0.01,-1.51,-17.31:15.04 0/0:3:-0.00,-0.90,-11.87:9.03 0/1:3:-3.31,-0.92,-4.71:23.97 0/0:2:-0.00,-0.60,-7.41:6.02 0/1:3:-1.84,-0.96,-4.84:8.87 0/0:4:-0.01,-1.21,-13.43:12.03 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-14.12:12.03 0/0:3:-0.00,-0.90,-11.17:9.03 0/0:6:-0.00,-1.81,-21.56:18.05 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:3:-0.00,-0.90,-11.08:9.03 0/0:3:-0.00,-0.91,-10.18:9.02 0/1:3:-1.72,-0.94,-4.66:7.78 0/0:2:-0.00,-0.60,-7.71:6.02 0/1:3:-2.30,-0.91,-7.63:13.89 0/0:5:-0.07,-1.56,-13.99:14.91 0/0:2:-0.01,-0.61,-5.92:6.00 0/0:3:-0.00,-0.90,-11.39:9.03 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:6:-0.02,-1.83,-19.57:18.02 0/0:5:-0.00,-1.51,-17.71:15.04 0/0:3:-0.00,-0.90,-11.59:9.03 0/0:4:-0.00,-1.21,-14.23:12.03 0/0:3:-0.00,-0.90,-10.98:9.03 0/0:3:-3.34,-4.01,-10.61:6.73 0/1:2:-1.80,-0.62,-2.99:11.80 0/0:3:-0.00,-0.90,-11.07:9.03 0/0:2:-0.00,-0.60,-6.91:6.02 0/0:4:-0.04,-1.24,-11.63:11.95 0/0:4:-0.00,-1.21,-15.03:12.04 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:2:-0.00,-0.60,-7.31:6.02 0/0:6:-0.04,-1.84,-19.38:17.99 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.01:6.02 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:3:-0.00,-0.90,-11.08:9.03 0/0:7:-0.06,-2.16,-22.40:20.96 0/1:3:-1.90,-0.92,-7.13:9.81 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:2:-0.00,-0.60,-7.21:6.02 0/0:5:-0.02,-1.52,-17.01:15.02 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:4:-0.04,-1.23,-12.96:11.97 0/0:3:-0.00,-0.91,-10.18:9.02 0/0:7:-0.01,-2.12,-23.52:21.05 0/0:2:-0.00,-0.60,-7.51:6.02
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20 92683 . A C 0.01 FDRtranche25.00to35.00+ AB=0.62;AC=6;AF=0.06;AN=98;DB=0;DP=210;Dels=0.00;HRun=2;HaplotypeScore=63.01;MQ=53.62;MQ0=0;OQ=30.09;QD=1.16;SB=-470.95 GT:DP:GL:GQ 0/1:5:-2.40,-1.51,-12.47:8.96 0/0:5:-0.01,-1.51,-15.55:15.01 0/1:4:-1.91,-1.21,-8.03:6.98 0/1:3:-2.50,-0.90,-6.78:15.97 0/1:5:-3.22,-1.54,-7.57:16.90 0/0:4:-0.00,-1.20,-14.01:12.04 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:5:-0.03,-1.52,-14.95:14.95 0/1:4:-1.40,-1.22,-9.54:1.87 0/0:5:-0.01,-1.51,-15.21:15.00 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.73:6.02 0/0:2:-0.00,-0.60,-6.78:6.02 0/0:2:-0.00,-0.60,-6.98:6.02 0/0:2:-0.00,-0.60,-6.29:6.01 0/0:2:-0.00,-0.60,-6.68:6.02 0/0:2:-0.00,-0.60,-7.03:6.02 0/0:5:-0.04,-1.53,-12.31:14.87 0/0:5:-0.01,-1.51,-15.62:15.03 0/0:3:-0.00,-0.90,-10.23:9.03 0/0:2:-0.00,-0.60,-6.78:6.02 0/0:9:-0.04,-2.73,-25.84:26.96 0/0:2:-0.00,-0.60,-6.08:6.01 0/0:3:-0.00,-0.90,-9.83:9.02 0/0:5:-0.01,-1.51,-15.21:15.00 0/0:3:-0.00,-0.91,-9.03:9.01 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:4:-1.20,-1.22,-9.53:0.19 0/0:4:-0.00,-1.20,-13.61:12.03 0/1:3:-2.80,-0.90,-6.18:18.98 0/0:4:-0.00,-1.20,-13.41:12.03 0/0:3:-0.00,-0.90,-10.27:9.02 0/0:4:-0.00,-1.21,-12.91:12.03 0/0:3:-0.00,-0.90,-9.82:9.02 0/0:7:-0.04,-2.13,-21.25:20.94 0/0:1:-0.00,-0.30,-2.89:3.00 0/0:2:-0.01,-0.60,-5.38:5.99 0/0:2:-0.00,-0.60,-6.68:6.02 0/0:4:-0.00,-1.21,-12.77:12.03 0/0:7:-0.05,-2.13,-18.63:20.84 0/0:2:-0.00,-0.60,-6.68:6.02 0/0:1:-0.00,-0.30,-3.39:3.01 0/0:2:-0.00,-0.60,-5.88:6.01 0/0:6:-0.00,-1.81,-20.30:18.05 0/0:2:-0.00,-0.60,-6.68:6.02 0/0:6:-0.00,-1.81,-19.66:18.05 0/0:3:-1.97,-2.79,-9.12:8.20 0/0:8:-0.02,-2.42,-23.58:24.00 0/0:2:-0.00,-0.60,-6.48:6.02
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20 93545 . G T 0.00 FDRtranche25.00to35.00+ AB=0.83;AC=3;AF=0.04;AN=98;DB=0;DP=108;Dels=0.00;HRun=7;HaplotypeScore=19.49;MQ=51.79;MQ0=0;OQ=10.52;QD=1.50;SB=-397.98 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:3:-0.00,-0.90,-10.47:9.03 0/0:3:-0.00,-0.90,-9.16:9.02 0/0:1:-0.00,-0.30,-2.80:3.00 0/0:1:-0.00,-0.30,-3.16:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.16:9.02 0/0:2:-0.00,-0.60,-6.61:6.02 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:4:-0.00,-1.21,-13.82:12.03 0/0:4:-0.00,-1.21,-13.42:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:5:-0.00,-1.51,-16.79:15.04 0/0:2:-0.00,-0.60,-6.51:6.02 0/0:4:-0.00,-1.21,-12.57:12.03 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:4:-0.00,-1.21,-12.62:12.03 0/0:3:-0.00,-0.90,-9.42:9.02 0/0:1:-0.00,-0.30,-3.30:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.82:9.02 0/0:1:-0.02,-0.31,-1.60:2.90 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:1:-0.04,-0.31,-1.30:2.78 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:4:-0.00,-1.21,-12.92:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.20:2.98 0/0:2:-0.00,-0.60,-6.91:6.02 1/1:1:-3.59,-0.30,-0.00:3.01 0/0:1:-0.00,-0.30,-3.16:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:4:-0.01,-1.21,-12.03:12.02 0/0:3:-0.00,-0.90,-9.47:9.02 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:4:-0.01,-1.21,-11.47:12.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.81:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.96:6.01 0/1:6:-3.00,-1.81,-15.23:11.90 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:2:-0.00,-0.60,-5.66:6.00
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20 93863 . G A 45.18 0 AB=0.29;AC=3;AF=0.03;AN=98;DB=0;DP=147;Dels=0.00;HRun=1;HaplotypeScore=16.00;MQ=37.57;MQ0=23;OQ=104.80;QD=10.48;SB=-487.23 GT:DP:GL:GQ 0/0:4:-0.00,-1.21,-12.26:12.02 0/0:2:-0.00,-0.60,-7.26:6.02 0/0:2:-0.05,-0.62,-4.26:5.76 0/0:3:-0.00,-0.90,-10.06:9.02 0/0:4:-0.00,-1.21,-12.73:12.03 0/0:2:-0.00,-0.60,-6.94:6.02 0/0:6:-0.03,-1.82,-18.89:17.90 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-3.37:3.01 0/0:5:-0.00,-1.51,-16.13:15.04 0/0:2:-0.00,-0.60,-7.06:6.02 0/0:1:-0.00,-0.30,-3.60:3.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-13.86:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:2:-0.00,-0.60,-5.86:6.01 0/0:3:-0.02,-0.91,-8.03:8.98 0/0:1:-0.00,-0.30,-2.80:3.00 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:3:-0.04,-0.93,-7.56:8.89 0/0:4:-0.00,-1.21,-12.80:12.03 0/0:2:-0.00,-0.60,-7.09:6.02 0/0:4:-0.01,-1.21,-11.93:12.00 0/0:1:-0.00,-0.30,-3.50:3.01 1/1:1:-2.47,-0.31,-0.01:3.00 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:2:-0.00,-0.60,-6.49:6.02 0/0:4:-0.00,-1.21,-13.08:12.03 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:3:-0.00,-0.90,-9.76:9.02 0/0:1:-0.00,-0.30,-3.37:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.89:6.02 0/0:3:-0.00,-0.90,-9.13:9.01 0/0:1:-0.00,-0.30,-2.87:3.00 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:3:-0.02,-0.91,-7.73:8.93 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-2.87:3.00 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:1:-0.00,-0.30,-3.50:3.01 0/1:5:-13.34,-1.51,-3.01:14.92
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20 93931 rs6051884 G A 2061.34 0 AB=0.57;AC=10;AF=0.12;AN=98;DB=1;DP=172;Dels=0.00;HRun=0;HaplotypeScore=12.72;MQ=33.33;MQ0=37;OQ=390.56;QD=9.53;SB=-586.02 GT:DP:GL:GQ 0/1:3:-7.31,-0.90,-3.27:23.65 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:1:-0.00,-0.30,-2.70:3.00 0/1:2:-3.17,-0.60,-3.70:25.64 0/0:1:-0.00,-0.30,-2.90:3.00 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:4:-0.00,-1.21,-12.80:12.03 0/0:1:-0.00,-0.30,-2.37:2.99 0/0:4:-0.00,-1.21,-13.03:12.02 0/1:2:-3.66,-0.61,-1.97:13.62 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.77:3.00 0/0:3:-0.00,-0.90,-10.99:9.03 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-7.06:6.02 0/0:3:-0.00,-0.91,-9.16:9.02 ./.:-1:0,0,0:-1 0/0:6:-0.00,-1.81,-19.07:18.04 0/0:1:-0.00,-0.30,-3.17:3.01 1/1:2:-7.12,-0.60,-0.00:6.02 0/0:3:-0.00,-0.90,-9.21:9.02 0/0:2:-0.00,-0.60,-7.29:6.02 0/0:1:-0.02,-0.31,-1.90:2.95 0/1:3:-2.66,-0.91,-6.67:17.50 0/0:2:-0.00,-0.60,-6.06:6.01 0/1:6:-10.68,-1.81,-9.64:78.26 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:3:-0.00,-0.91,-9.79:9.02 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:1:-0.00,-0.30,-2.27:2.99 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.06:6.02 0/0:4:-0.00,-1.21,-12.53:12.02 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:2:-0.01,-0.61,-4.76:5.98 0/0:3:-0.00,-0.90,-8.91:9.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/1:6:-7.24,-1.82,-11.10:54.21 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.97:3.01 1/1:2:-5.52,-0.62,-0.02:5.98 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.64:6.01 0/0:2:-0.00,-0.60,-6.04:6.01 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:4:-0.01,-1.21,-11.50:11.97
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20 94091 rs6051892 T C 586.04 0 AB=0.50;AC=3;AF=0.03;AN=98;DB=1;DP=132;Dels=0.00;HRun=0;HaplotypeScore=8.13;MQ=55.84;MQ0=0;OQ=93.56;QD=18.71;SB=-467.00 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.92:6.02 0/0:2:-0.00,-0.61,-6.01:6.01 0/0:3:-0.00,-0.90,-11.38:9.03 0/0:1:-0.00,-0.30,-4.07:3.01 0/0:3:-0.00,-0.91,-9.59:9.02 0/0:2:-0.00,-0.60,-7.63:6.02 0/0:1:-0.00,-0.30,-3.76:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-14.66:12.04 0/0:5:-0.01,-1.51,-17.20:15.04 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:1:-0.00,-0.30,-3.97:3.01 0/0:5:-0.00,-1.51,-18.21:15.04 0/0:5:-0.01,-1.51,-17.49:15.04 0/0:1:-0.00,-0.30,-4.07:3.01 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:3:-0.00,-0.90,-10.97:9.03 0/0:2:-0.00,-0.60,-7.63:6.02 0/0:1:-0.00,-0.30,-3.96:3.01 0/0:4:-0.05,-1.24,-12.96:11.96 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:4:-0.01,-1.21,-13.75:12.03 0/0:4:-0.00,-1.21,-14.66:12.04 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:2:-0.00,-0.60,-7.73:6.02 0/0:5:-0.01,-1.51,-16.61:15.03 0/0:2:-0.00,-0.60,-7.11:6.02 0/0:3:-0.00,-0.90,-11.09:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-8.13:6.02 0/0:5:-0.00,-1.51,-19.42:15.05 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:4:-0.01,-1.21,-13.75:12.03 0/0:4:-0.00,-1.21,-14.93:12.04 0/0:4:-0.01,-1.21,-13.75:12.03 0/0:4:-0.00,-1.21,-14.75:12.04 1/1:3:-10.29,-0.90,-0.00:9.03 0/0:1:-0.00,-0.30,-3.76:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:4:-0.00,-1.21,-14.76:12.04 0/0:3:-0.00,-0.90,-10.79:9.03 0/1:2:-3.60,-0.60,-3.66:29.94 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:3:-0.00,-0.90,-11.18:9.03
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20 94184 . A T 0.01 FDRtranche25.00to35.00+ AB=0.74;AC=5;AF=0.05;AN=98;DB=0;DP=172;Dels=0.00;HRun=3;HaplotypeScore=19.80;MQ=55.85;MQ0=0;OQ=16.74;QD=0.80;SB=-448.97 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:2:-0.01,-0.61,-5.70:5.99 0/1:4:-1.55,-1.23,-8.16:3.24 ./.:-1:0,0,0:-1 0/0:2:-0.02,-0.62,-5.14:5.96 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:2:-0.00,-0.60,-6.54:6.01 0/0:2:-0.00,-0.60,-7.18:6.02 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:4:-0.00,-1.21,-13.52:12.03 0/0:2:-0.00,-0.60,-6.98:6.02 ./.:-1:0,0,0:-1 0/1:4:-3.34,-1.21,-10.38:21.35 0/1:3:-2.44,-0.91,-6.84:15.35 0/0:2:-0.00,-0.60,-6.78:6.02 0/0:4:-0.00,-1.21,-14.08:12.04 0/0:3:-0.04,-0.93,-8.30:8.93 0/0:3:-0.02,-0.92,-8.64:8.97 0/0:3:-0.00,-0.90,-10.14:9.03 0/0:2:-0.00,-0.60,-7.14:6.02 ./.:-1:0,0,0:-1 0/0:7:-0.00,-2.11,-23.75:21.06 0/0:6:-0.06,-1.85,-14.83:17.92 0/0:4:-0.00,-1.21,-12.99:12.03 0/0:4:-0.00,-1.21,-13.22:12.03 0/0:4:-0.01,-1.21,-12.49:12.02 0/0:3:-0.00,-0.90,-10.08:9.03 0/0:3:-0.00,-0.90,-10.18:9.03 0/0:4:-0.01,-1.21,-12.63:12.02 0/0:1:-0.00,-0.30,-3.04:3.01 0/0:2:-0.01,-0.61,-5.94:6.00 0/0:2:-0.01,-0.61,-5.74:5.99 ./.:-1:0,0,0:-1 0/0:5:-0.03,-1.52,-14.93:14.98 0/0:3:-0.01,-0.91,-8.54:9.00 0/0:3:-0.05,-0.94,-8.48:8.91 0/0:4:-0.00,-1.21,-13.78:12.03 0/0:6:-0.03,-1.83,-16.13:17.99 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:4:-0.02,-1.22,-11.33:11.99 ./.:-1:0,0,0:-1 0/1:4:-2.34,-1.21,-10.00:11.33 0/0:1:-0.00,-0.30,-3.54:3.01 0/0:3:-0.00,-0.91,-9.94:9.02 0/1:6:-2.34,-1.81,-16.42:5.32 0/0:5:-0.01,-1.51,-16.67:15.04 0/0:5:-0.01,-1.51,-16.23:15.04 0/0:2:-0.00,-0.60,-6.70:6.02
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20 94364 . T C 1.16 FDRtranche25.00to35.00 AB=0.70;AC=1;AF=0.02;AN=98;DB=0;DP=138;Dels=0.00;HRun=0;HaplotypeScore=14.82;MQ=54.70;MQ0=0;OQ=10.80;QD=1.54;SB=-486.64 GT:DP:GL:GQ ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-12.19:9.03 0/0:1:-0.00,-0.30,-4.77:3.01 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:1:-0.00,-0.30,-3.67:3.01 0/0:2:-0.00,-0.60,-7.91:6.02 0/0:2:-0.00,-0.60,-7.82:6.02 0/0:3:-0.00,-0.90,-11.28:9.03 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:3:-0.00,-0.90,-11.29:9.03 0/1:3:-3.80,-0.90,-7.92:28.93 0/0:3:-0.00,-0.90,-11.19:9.03 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.98:9.03 0/0:4:-0.02,-1.22,-12.95:12.01 0/0:2:-0.00,-0.60,-7.32:6.02 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:5:-0.00,-1.51,-18.21:15.05 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.21:6.02 0/0:3:-0.00,-0.90,-11.39:9.03 0/0:4:-0.00,-1.21,-14.46:12.04 0/0:5:-0.00,-1.51,-18.11:15.05 0/0:3:-0.00,-0.91,-10.28:9.02 0/0:3:-0.00,-0.90,-10.79:9.03 0/0:2:-0.00,-0.60,-7.32:6.02 0/0:3:-0.00,-0.90,-10.68:9.03 0/0:8:-0.01,-2.42,-27.40:24.07 0/0:2:-0.00,-0.60,-7.32:6.02 0/0:4:-0.01,-1.21,-13.32:12.03 0/0:2:-0.00,-0.60,-7.42:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.31,-2.56:3.00 0/0:2:-0.00,-0.60,-7.22:6.02 0/0:2:-0.00,-0.60,-6.91:6.02 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:1:-0.00,-0.30,-3.57:3.01 0/0:2:-0.00,-0.60,-7.33:6.02 0/0:7:-0.00,-2.11,-25.16:21.06 0/0:6:-0.02,-1.83,-20.25:18.01 0/0:2:-0.00,-0.60,-7.11:6.02 ./.:-1:0,0,0:-1 0/0:6:-0.01,-1.81,-20.09:18.04 0/0:2:-0.00,-0.60,-7.53:6.02 0/0:1:-0.00,-0.30,-3.66:3.01 0/0:2:-0.00,-0.60,-7.22:6.02 0/0:2:-0.00,-0.60,-7.33:6.02 0/0:2:-0.00,-0.60,-6.92:6.02 0/0:6:-0.01,-1.81,-21.09:18.05
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20 94408 . G T 0.08 FDRtranche25.00to35.00+ AB=0.48;AC=10;AF=0.14;AN=98;DB=0;DP=97;Dels=0.00;HRun=3;HaplotypeScore=24.22;MQ=53.90;MQ0=0;OQ=116.49;QD=5.55;SB=-335.90 GT:DP:GL:GQ ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.72:8.97 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.26:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 1/1:1:-2.09,-0.31,-0.01:2.97 0/0:1:-0.00,-0.30,-3.00:3.01 0/0:1:-0.00,-0.30,-3.36:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:4:-0.05,-1.22,-9.56:11.72 0/0:2:-0.00,-0.60,-7.11:6.02 0/0:5:-0.02,-1.51,-13.63:14.97 0/0:2:-0.02,-0.61,-4.86:5.91 0/0:3:-0.00,-0.90,-10.07:9.03 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:5:-0.00,-1.51,-16.69:15.04 0/1:5:-4.39,-1.53,-9.50:28.65 ./.:-1:0,0,0:-1 0/0:1:-0.04,-0.31,-1.30:2.78 1/1:1:-1.59,-0.33,-0.04:2.89 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:5:-0.03,-1.52,-14.53:14.90 0/1:3:-3.19,-0.95,-3.27:22.37 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:2:-0.01,-0.61,-5.20:5.96 0/1:3:-2.40,-0.91,-6.52:14.89 0/1:2:-1.60,-0.63,-3.39:9.69 0/0:1:-0.00,-0.30,-3.46:3.01 0/1:2:-3.60,-0.60,-3.26:26.55 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:3:-0.00,-0.90,-9.26:9.02 0/0:3:-0.05,-0.92,-6.86:8.72 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/1:2:-2.30,-0.61,-3.11:16.88 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:3:-0.02,-0.91,-7.66:8.88 0/0:3:-0.00,-0.91,-9.47:9.02
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20 94528 rs59920385 T G 723.78 0 AB=0.33;AC=3;AF=0.03;AN=98;DB=1;DP=99;Dels=0.00;HRun=0;HaplotypeScore=17.34;MQ=55.47;MQ0=1;OQ=67.59;QD=11.26;SB=-513.70 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-4.09:3.01 0/0:2:-0.00,-0.60,-6.43:6.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:2:-0.00,-0.60,-7.49:6.02 0/0:1:-0.00,-0.30,-3.59:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.73:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.33:6.02 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:4:-0.03,-1.22,-10.97:11.86 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:2:-0.00,-0.60,-7.33:6.02 0/0:2:-0.00,-0.60,-7.69:6.02 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:1:-0.00,-0.30,-3.59:3.01 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:4:-0.01,-1.21,-12.92:12.02 0/0:1:-0.00,-0.30,-3.59:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.73:6.02 0/0:1:-0.00,-0.30,-3.59:3.01 0/0:4:-0.01,-1.21,-11.97:12.00 0/0:3:-0.00,-0.90,-11.08:9.03 0/0:1:-0.00,-0.30,-2.54:3.00 0/0:3:-0.01,-0.91,-8.73:9.00 0/0:2:-0.00,-0.60,-7.13:6.02 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:2:-0.00,-0.60,-6.68:6.02 0/0:2:-0.00,-0.60,-6.63:6.01 0/0:3:-0.00,-0.90,-10.53:9.03 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:5:-0.00,-1.51,-17.16:15.04 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:3:-0.00,-0.90,-10.43:9.03 1/1:3:-7.92,-0.91,-0.02:8.91 0/0:1:-0.00,-0.30,-3.49:3.01 0/0:1:-0.00,-0.30,-2.74:3.00 0/0:1:-0.00,-0.30,-3.79:3.01 0/0:2:-0.00,-0.60,-7.49:6.02 0/0:4:-0.00,-1.21,-13.42:12.03 0/1:3:-3.70,-0.91,-3.27:23.56 0/0:2:-0.00,-0.60,-6.28:6.01 0/0:3:-0.00,-0.90,-10.78:9.03
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20 94533 . G T 0.21 FDRtranche25.00to35.00+ AB=0.67;AC=3;AF=0.04;AN=98;DB=0;DP=109;Dels=0.00;HRun=0;HaplotypeScore=14.99;MQ=56.44;MQ0=1;OQ=14.05;QD=2.34;SB=-393.99 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:2:-0.00,-0.60,-6.86:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:2:-0.00,-0.60,-6.00:6.01 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:6:-0.01,-1.81,-17.87:18.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:1:-0.00,-0.30,-3.46:3.01 0/1:3:-1.70,-0.92,-6.24:7.74 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:1:-0.01,-0.30,-2.00:2.97 0/0:1:-0.00,-0.30,-2.40:2.99 0/0:3:-0.02,-0.91,-7.60:8.91 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:4:-0.02,-1.21,-10.66:11.92 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-10.72:11.96 1/1:2:-4.49,-0.63,-0.04:5.90 0/0:2:-0.01,-0.61,-5.16:5.97 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:2:-0.01,-0.61,-4.86:5.93 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.02:9.02 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:3:-0.05,-0.92,-7.96:8.73 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:6:-0.02,-1.81,-17.06:17.95 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:2:-0.03,-0.61,-4.76:5.84 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-2.96:3.01 0/0:2:-0.00,-0.60,-5.66:6.01 0/0:4:-0.02,-1.21,-11.42:11.95 0/0:1:-0.00,-0.30,-2.80:3.00 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:2:-0.00,-0.60,-6.70:6.02 0/0:2:-0.03,-0.61,-3.30:5.81 0/0:4:-0.00,-1.21,-12.36:12.03 0/0:4:-0.00,-1.21,-11.66:12.02 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:2:-0.00,-0.60,-5.90:6.01
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20 94797 . G T 0.04 FDRtranche25.00to35.00+ AB=0.76;AC=4;AF=0.06;AN=98;DB=0;DP=116;Dels=0.00;HRun=0;HaplotypeScore=13.86;MQ=57.55;MQ0=0;OQ=14.15;QD=0.94;SB=-378.97 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-5.60:6.01 0/0:4:-0.00,-1.20,-13.97:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:2:-0.00,-0.60,-6.16:6.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.91,-8.26:9.00 0/0:2:-0.00,-0.60,-5.91:6.01 0/0:4:-0.05,-1.22,-11.42:11.74 0/0:8:-0.01,-2.42,-24.29:24.03 0/0:3:-0.01,-0.91,-9.12:8.99 0/1:3:-1.70,-0.93,-5.64:7.75 0/0:1:-0.04,-0.31,-1.30:2.78 0/0:3:-0.00,-0.90,-10.32:9.03 0/1:6:-2.20,-1.81,-16.08:3.84 0/0:5:-0.01,-1.51,-14.52:14.97 0/0:2:-0.04,-0.62,-4.16:5.78 0/0:2:-0.01,-0.61,-4.90:5.95 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-8.76:9.01 ./.:-1:0,0,0:-1 0/0:5:-0.01,-1.51,-15.33:15.00 0/0:4:-0.02,-1.21,-12.17:11.95 0/0:4:-0.01,-1.21,-11.47:11.96 0/0:1:-0.00,-0.30,-2.50:3.00 0/0:3:-0.07,-0.93,-5.86:8.62 0/0:2:-0.00,-0.60,-6.31:6.01 0/0:2:-0.00,-0.60,-6.71:6.02 0/0:3:-0.05,-0.92,-7.92:8.73 0/0:4:-0.00,-1.21,-12.73:12.03 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.56:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:2:-0.01,-0.60,-4.50:5.97 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.56:6.02 1/1:1:-2.39,-0.30,-0.01:2.99 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:3:-0.02,-0.91,-8.42:8.94 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.46:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.06:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.81:6.02 0/0:1:-0.00,-0.30,-3.36:3.01
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20 94952 rs1857092 G T 246.32 0 AB=0.54;AC=9;AF=0.12;AN=98;DB=1;DP=116;Dels=0.00;HRun=1;HaplotypeScore=8.98;MQ=57.27;MQ0=0;OQ=401.38;QD=12.16;SB=-494.43 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.10:6.01 0/0:5:-0.00,-1.51,-17.12:15.04 0/0:2:-0.00,-0.60,-6.80:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:2:-0.00,-0.60,-6.70:6.02 0/0:2:-0.00,-0.60,-7.11:6.02 0/0:1:-0.00,-0.30,-3.40:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.40:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.80:6.01 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:4:-0.01,-1.21,-12.27:12.00 0/1:3:-6.83,-0.90,-3.66:27.54 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:4:-0.00,-1.21,-12.43:12.02 0/0:2:-0.00,-0.60,-6.06:6.01 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-11.46:11.99 0/1:6:-6.44,-1.81,-11.66:46.29 0/0:2:-0.00,-0.60,-6.06:6.01 0/1:3:-3.70,-0.91,-5.26:27.96 0/0:3:-0.00,-0.90,-9.86:9.02 1/1:1:-3.49,-0.30,-0.00:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:4:-0.01,-1.21,-11.82:12.01 0/0:4:-0.01,-1.21,-10.66:11.98 ./.:-1:0,0,0:-1 0/1:4:-7.14,-1.21,-5.81:46.07 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:3:-0.00,-0.90,-9.16:9.02 0/0:3:-0.00,-0.90,-9.90:9.02 0/0:2:-0.01,-0.61,-4.40:5.96 0/0:2:-0.00,-0.60,-6.26:6.01 0/0:3:-0.00,-0.91,-8.62:9.01 0/1:3:-7.04,-0.91,-2.00:10.95 0/0:5:-0.01,-1.51,-15.13:15.02 ./.:-1:0,0,0:-1 0/1:4:-10.59,-1.21,-3.06:18.53 0/0:1:-0.00,-0.30,-3.40:3.01 0/1:3:-3.30,-0.90,-5.86:23.93 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:2:-0.01,-0.61,-5.16:5.95 0/0:1:-0.00,-0.30,-3.10:3.01
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20 95052 . T C 546.36 0 AB=0.50;AC=3;AF=0.03;AN=98;DB=0;DP=107;Dels=0.00;HRun=0;HaplotypeScore=13.42;MQ=58.51;MQ0=0;OQ=117.35;QD=13.04;SB=-515.91 GT:DP:GL:GQ 0/0:2:-0.00,-0.61,-6.63:6.01 0/0:1:-0.00,-0.30,-4.06:3.01 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:1:-0.00,-0.30,-3.57:3.01 0/0:2:-0.00,-0.61,-6.32:6.01 0/0:2:-0.00,-0.60,-7.13:6.02 0/0:2:-0.00,-0.60,-8.12:6.02 0/0:2:-0.00,-0.60,-7.42:6.02 0/0:1:-0.03,-0.32,-1.97:2.96 0/0:1:-0.00,-0.30,-3.57:3.01 0/0:1:-0.00,-0.30,-3.96:3.01 0/0:2:-0.00,-0.60,-7.21:6.02 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:2:-0.00,-0.60,-7.91:6.02 0/0:4:-0.00,-1.21,-15.56:12.04 0/0:3:-0.00,-0.90,-10.59:9.03 0/0:2:-0.00,-0.60,-7.61:6.02 0/0:2:-0.00,-0.60,-7.71:6.02 0/0:2:-0.00,-0.60,-7.62:6.02 ./.:-1:0,0,0:-1 0/0:1:-0.01,-0.31,-2.37:2.99 0/0:2:-0.00,-0.60,-7.21:6.02 0/0:5:-0.00,-1.51,-18.00:15.05 0/0:2:-0.00,-0.60,-7.73:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.60:9.03 0/0:3:-0.00,-0.90,-11.08:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.72:6.02 0/0:4:-0.00,-1.21,-14.62:12.04 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:3:-0.00,-0.90,-11.50:9.03 0/0:2:-0.00,-0.60,-8.02:6.02 0/0:5:-0.00,-1.51,-18.90:15.05 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-15.16:12.04 0/0:3:-0.00,-0.90,-11.28:9.03 0/0:3:-0.00,-0.90,-11.08:9.03 0/0:3:-0.00,-0.91,-10.38:9.02 0/1:6:-7.43,-1.83,-9.80:55.95 0/0:1:-0.00,-0.30,-3.56:3.01 0/0:3:-0.04,-0.93,-9.49:8.95 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-10.99:9.03 ./.:-1:0,0,0:-1 1/1:3:-10.06,-0.90,-0.00:9.02 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:4:-0.00,-1.21,-14.93:12.04
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20 95093 rs6037629 T G 757.34 0 AC=2;AF=0.02;AN=98;DB=1;DP=126;Dels=0.00;HRun=0;HaplotypeScore=10.13;MQ=58.76;MQ0=0;OQ=54.48;QD=18.16;SB=-450.00 GT:DP:GL:GQ 0/0:2:-0.00,-0.60,-6.83:6.02 0/0:1:-0.00,-0.30,-3.64:3.01 0/0:3:-0.00,-0.90,-10.37:9.03 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:4:-0.00,-1.21,-13.42:12.03 0/0:1:-0.00,-0.30,-3.24:3.01 0/0:1:-0.00,-0.30,-2.69:3.00 0/0:3:-0.00,-0.90,-10.77:9.03 0/0:2:-0.02,-0.61,-3.78:5.90 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:2:-0.00,-0.60,-6.23:6.01 0/0:2:-0.00,-0.60,-6.68:6.02 ./.:-1:0,0,0:-1 0/0:5:-0.00,-1.51,-17.42:15.04 0/0:3:-0.00,-0.90,-11.48:9.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.88:6.02 0/0:2:-0.00,-0.60,-6.83:6.02 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-14.02:12.04 0/0:6:-0.00,-1.81,-21.96:18.06 0/0:4:-0.01,-1.21,-11.87:11.98 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:3:-0.00,-0.90,-10.43:9.03 0/0:2:-0.00,-0.60,-6.78:6.02 0/0:5:-0.00,-1.51,-17.01:15.04 0/0:1:-0.00,-0.30,-3.44:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:6:-0.01,-1.81,-18.70:18.01 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:4:-0.00,-1.21,-13.27:12.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.23:6.02 0/0:8:-0.00,-2.41,-26.68:24.06 0/0:6:-0.01,-1.81,-17.83:18.02 0/0:1:-0.00,-0.30,-3.04:3.01 0/0:1:-0.00,-0.30,-2.74:3.00 0/0:2:-0.00,-0.60,-6.28:6.01 0/0:5:-0.00,-1.51,-16.86:15.04 1/1:3:-9.20,-0.90,-0.00:9.02 0/0:1:-0.00,-0.30,-3.69:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.44:3.01 0/0:3:-0.00,-0.90,-10.53:9.03 0/0:3:-0.00,-0.90,-9.83:9.02 0/0:1:-0.00,-0.30,-3.54:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.99:6.02
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20 96298 . T C 10.98 0 AB=0.60;AC=1;AF=0.01;AN=98;DB=0;DP=248;Dels=0.00;HRun=0;HaplotypeScore=29.58;MQ=58.66;MQ0=0;OQ=20.86;QD=4.17;SB=-522.65 GT:DP:GL:GQ 0/0:4:-0.00,-1.21,-15.35:12.04 0/1:5:-7.17,-1.51,-11.17:56.59 0/0:5:-0.00,-1.51,-19.51:15.05 0/0:3:-0.00,-0.91,-9.98:9.02 0/0:7:-0.00,-2.11,-25.43:21.06 0/0:5:-0.00,-1.51,-18.21:15.05 0/0:3:-0.00,-0.90,-11.98:9.03 0/0:5:-0.00,-1.51,-18.89:15.05 0/0:8:-0.00,-2.41,-31.87:24.08 0/0:4:-0.00,-1.20,-16.16:12.04 0/0:4:-0.01,-1.21,-13.76:12.03 0/0:3:-0.00,-0.90,-11.18:9.03 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.28:9.03 0/0:4:-0.03,-1.23,-13.87:11.99 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:4:-0.00,-1.21,-15.26:12.04 0/0:7:-0.01,-2.12,-24.31:21.05 0/0:5:-0.01,-1.51,-17.72:15.04 0/0:4:-0.00,-1.21,-15.25:12.04 0/0:8:-0.00,-2.41,-30.49:24.08 0/0:10:-0.01,-3.02,-34.54:30.07 0/0:5:-0.00,-1.51,-18.21:15.05 0/0:5:-0.00,-1.51,-18.80:15.05 0/0:7:-0.00,-2.11,-25.83:21.06 0/0:4:-0.00,-1.21,-14.95:12.04 0/0:5:-0.00,-1.51,-19.20:15.05 0/0:1:-0.01,-0.31,-2.67:3.00 0/0:4:-0.00,-1.21,-15.46:12.04 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:2:-0.00,-0.60,-7.81:6.02 0/0:4:-0.00,-1.21,-15.05:12.04 0/0:5:-0.05,-1.54,-17.31:14.97 0/0:6:-0.07,-1.86,-16.59:17.92 0/0:6:-0.00,-1.81,-21.68:18.05 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:12:-0.03,-3.64,-42.32:36.07 0/0:8:-0.01,-2.41,-28.91:24.07 0/0:8:-0.01,-2.42,-28.39:24.07 0/0:2:-0.00,-0.60,-6.83:6.02 0/0:2:-0.00,-0.60,-7.21:6.02 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-11.87:9.03 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:5:-0.01,-1.51,-16.60:15.03 0/0:3:-0.00,-0.91,-10.29:9.02 0/0:13:-0.02,-3.93,-45.37:39.10 0/0:4:-0.02,-1.22,-12.05:12.00
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20 97122 rs6515824 C T 1320.40 0 AB=0.49;AC=8;AF=0.09;AN=98;DB=1;DP=169;Dels=0.00;HRun=0;HaplotypeScore=30.04;MQ=57.52;MQ0=0;OQ=449.94;QD=13.23;SB=-599.78 GT:DP:GL:GQ 0/0:4:-0.01,-1.21,-10.73:11.99 0/0:6:-0.00,-1.81,-21.12:18.05 0/0:5:-0.01,-1.51,-13.74:14.98 0/0:4:-0.00,-1.21,-13.03:12.02 0/0:5:-0.02,-1.52,-12.80:14.97 0/0:2:-0.00,-0.60,-6.06:6.01 0/0:3:-0.01,-0.91,-9.06:9.01 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:7:-0.00,-2.11,-23.16:21.05 0/0:7:-0.01,-2.11,-23.36:21.04 0/0:1:-0.01,-0.31,-2.00:2.97 0/0:1:-0.00,-0.30,-2.97:3.01 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:3:-0.00,-0.90,-9.93:9.02 0/1:3:-7.33,-0.90,-3.50:25.93 0/0:5:-0.00,-1.51,-17.20:15.04 0/0:5:-0.04,-1.53,-11.33:14.88 0/0:2:-0.01,-0.60,-5.04:5.99 0/0:1:-0.00,-0.30,-2.97:3.01 0/0:2:-0.00,-0.60,-6.66:6.02 0/1:6:-16.53,-1.81,-2.68:8.63 0/0:2:-0.00,-0.60,-7.29:6.02 1/1:1:-3.66,-0.30,-0.00:3.01 0/0:3:-0.00,-0.90,-9.99:9.02 0/1:4:-3.07,-1.21,-9.86:18.62 0/0:4:-0.00,-1.21,-13.58:12.03 0/1:9:-12.61,-2.77,-13.63:98.44 0/0:2:-0.01,-0.61,-4.94:5.94 0/0:3:-0.01,-0.91,-8.36:9.00 0/0:2:-0.00,-0.60,-5.66:6.01 0/0:4:-0.00,-1.21,-13.88:12.03 0/1:2:-3.76,-0.60,-3.17:25.66 0/0:3:-0.00,-0.90,-10.59:9.03 0/0:3:-0.01,-0.91,-8.63:8.95 0/0:2:-0.01,-0.61,-5.26:5.96 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:4:-0.00,-1.21,-13.26:12.03 0/0:1:-0.00,-0.30,-3.50:3.01 0/1:4:-5.43,-1.23,-4.97:37.38 0/0:5:-0.00,-1.51,-16.85:15.04 0/0:2:-0.00,-0.60,-5.64:6.01 0/0:2:-0.00,-0.60,-6.36:6.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-5.74:6.01 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:9:-0.04,-2.74,-27.08:26.92 0/0:8:-0.00,-2.41,-27.94:24.07
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20 97227 . A C 13.24 0 AB=0.25;AC=1;AF=0.01;AN=98;DB=0;DP=155;Dels=0.00;HRun=1;HaplotypeScore=31.42;MQ=55.71;MQ0=0;OQ=28.30;QD=7.08;SB=-497.00 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:4:-0.00,-1.20,-15.12:12.04 0/0:3:-0.00,-0.90,-10.53:9.03 0/0:2:-0.00,-0.60,-7.03:6.02 0/0:5:-0.04,-1.53,-14.11:14.92 0/0:4:-0.00,-1.21,-13.22:12.02 0/0:5:-0.03,-1.52,-14.36:14.92 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:2:-0.00,-0.60,-6.93:6.02 0/0:6:-0.00,-1.81,-21.26:18.05 0/0:1:-0.00,-0.30,-3.89:3.01 0/0:4:-0.04,-1.22,-11.11:11.82 0/0:1:-0.00,-0.30,-3.69:3.01 0/0:2:-0.00,-0.60,-7.18:6.02 0/0:1:-0.00,-0.30,-3.79:3.01 0/0:1:-0.00,-0.30,-3.24:3.01 0/0:3:-0.00,-0.90,-10.93:9.03 0/0:3:-0.00,-0.90,-10.88:9.03 0/0:3:-0.00,-0.90,-10.23:9.02 0/1:4:-7.60,-1.21,-3.35:21.38 0/0:2:-0.00,-0.60,-7.03:6.02 0/0:6:-0.00,-1.81,-19.90:18.05 0/0:4:-0.01,-1.21,-12.77:12.01 0/0:6:-0.00,-1.81,-21.06:18.05 0/0:1:-0.00,-0.30,-3.54:3.01 0/0:2:-0.00,-0.60,-7.13:6.02 0/0:2:-0.01,-0.61,-5.63:5.97 0/0:6:-0.00,-1.81,-20.91:18.05 0/0:3:-0.00,-0.90,-10.43:9.03 0/0:3:-0.00,-0.90,-9.87:9.02 0/0:4:-0.01,-1.21,-11.97:12.00 0/0:3:-0.00,-0.90,-10.93:9.03 0/0:1:-0.04,-0.32,-1.34:2.80 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.34:3.01 0/0:3:-0.00,-0.90,-10.63:9.03 0/0:2:-0.00,-0.60,-6.33:6.01 0/0:2:-0.00,-0.60,-7.29:6.02 0/0:1:-0.01,-0.30,-2.14:2.98 0/0:3:-0.00,-0.90,-10.78:9.03 0/0:6:-0.00,-1.81,-21.11:18.05 0/0:2:-0.00,-0.60,-6.23:6.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.23:6.01 0/0:2:-0.00,-0.60,-5.88:6.01 0/0:2:-0.00,-0.60,-6.99:6.02 0/0:5:-0.01,-1.51,-14.99:15.02 0/0:4:-0.00,-1.20,-14.32:12.04 0/0:4:-0.00,-1.21,-14.02:12.03
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20 97394 rs6052094 A G 3244.73 0 AB=0.40;AC=9;AF=0.10;AN=98;DB=1;DP=152;Dels=0.00;HRun=1;HaplotypeScore=19.90;MQ=58.12;MQ0=0;OQ=472.91;QD=13.51;SB=-704.62 GT:DP:GL:GQ 0/0:1:-0.01,-0.31,-2.47:3.00 0/0:2:-0.01,-0.61,-6.23:6.00 0/0:3:-0.00,-0.91,-10.38:9.03 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:2:-0.00,-0.60,-7.41:6.02 0/0:2:-0.00,-0.60,-7.42:6.02 0/0:6:-0.00,-1.81,-24.18:18.06 0/0:4:-0.00,-1.21,-14.65:12.03 0/0:6:-0.00,-1.81,-23.58:18.06 0/0:4:-0.00,-1.21,-14.25:12.03 0/0:1:-0.00,-0.30,-4.07:3.01 0/0:4:-0.00,-1.21,-15.22:12.04 0/0:1:-0.00,-0.30,-3.86:3.01 0/0:6:-0.01,-1.82,-22.56:18.04 0/0:1:-0.00,-0.30,-3.97:3.01 0/1:6:-11.86,-1.81,-7.03:52.17 0/0:1:-0.00,-0.30,-3.97:3.01 0/0:1:-0.01,-0.31,-2.37:2.99 0/0:4:-0.01,-1.21,-14.05:12.03 0/0:4:-0.00,-1.21,-15.45:12.04 0/0:4:-0.00,-1.21,-14.46:12.04 0/1:3:-5.29,-0.91,-3.76:28.54 0/0:7:-0.00,-2.11,-26.13:21.07 0/0:2:-0.00,-0.60,-7.51:6.02 0/0:2:-0.00,-0.60,-6.92:6.02 0/1:2:-2.90,-0.60,-3.86:22.93 0/0:3:-0.00,-0.90,-11.57:9.03 0/1:5:-7.16,-1.52,-7.14:56.22 0/0:3:-0.00,-0.90,-11.58:9.03 0/0:4:-0.00,-1.21,-14.03:12.03 0/0:2:-0.00,-0.60,-7.71:6.02 0/0:4:-0.00,-1.21,-15.85:12.04 0/0:2:-0.02,-0.62,-5.92:5.99 0/0:1:-0.00,-0.30,-4.07:3.01 0/0:5:-0.00,-1.51,-19.02:15.05 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.42:6.02 0/0:2:-0.01,-0.61,-6.52:6.01 0/0:2:-0.00,-0.60,-7.42:6.02 0/0:1:-0.00,-0.30,-3.66:3.01 1/1:2:-6.04,-0.60,-0.00:6.01 ./.:-1:0,0,0:-1 0/1:3:-5.37,-0.91,-3.46:25.54 ./.:-1:0,0,0:-1 0/1:3:-5.54,-0.91,-3.07:21.64 0/0:2:-0.00,-0.61,-6.73:6.01 0/1:6:-14.03,-1.81,-3.87:20.53 0/0:4:-0.01,-1.21,-13.85:12.03 0/0:6:-0.00,-1.81,-23.38:18.06
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20 97395 . G A 10.26 0 AB=0.17;AC=3;AF=0.03;AN=98;DB=0;DP=152;Dels=0.00;HRun=1;HaplotypeScore=29.40;MQ=57.99;MQ0=0;OQ=183.89;QD=22.99;SB=-589.97 GT:DP:GL:GQ 0/0:1:-0.01,-0.30,-2.40:2.99 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:3:-0.00,-0.90,-9.23:9.01 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:2:-0.01,-0.61,-5.04:5.98 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:6:-0.00,-1.81,-20.32:18.05 0/0:4:-0.00,-1.21,-13.13:12.03 0/0:6:-0.00,-1.81,-20.32:18.05 0/0:5:-0.03,-1.52,-13.50:14.90 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:5:-0.00,-1.51,-15.07:15.03 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:6:-0.04,-1.82,-18.37:17.85 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:7:-0.00,-2.11,-23.62:21.06 0/0:1:-0.00,-0.30,-3.60:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:4:-0.00,-1.21,-12.63:12.02 0/0:4:-0.00,-1.21,-12.93:12.03 0/0:4:-0.01,-1.21,-12.26:12.02 0/0:4:-0.04,-1.23,-9.76:11.89 0/0:7:-0.01,-2.11,-21.29:21.04 0/0:2:-0.00,-0.60,-6.24:6.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:3:-0.00,-0.90,-8.61:9.01 0/0:5:-0.02,-1.52,-14.93:14.98 0/0:3:-0.00,-0.90,-9.63:9.02 0/0:3:-0.01,-0.91,-7.93:8.98 0/0:2:-0.00,-0.60,-5.64:6.01 0/0:4:-0.00,-1.21,-13.03:12.03 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:5:-0.00,-1.51,-16.95:15.04 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:3:-0.00,-0.90,-9.46:9.02 0/0:1:-2.34,-2.48,-2.70:1.44 1/1:2:-6.01,-0.61,-0.01:6.00 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-8.83:9.02 ./.:-1:0,0,0:-1 0/0:3:-0.01,-0.91,-8.13:9.00 0/0:2:-0.00,-0.60,-6.79:6.02 0/1:6:-18.01,-1.81,-3.17:13.63 0/0:4:-0.01,-1.21,-12.23:12.01 0/0:6:-0.01,-1.81,-18.82:18.04
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20 97883 . C A 0.01 FDRtranche25.00to35.00+ AB=0.75;AC=4;AF=0.04;AN=98;DB=0;DP=129;Dels=0.00;HRun=4;HaplotypeScore=10.50;MQ=57.45;MQ0=0;OQ=13.70;QD=1.37;SB=-467.00 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-7.10:6.02 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:2:-0.00,-0.60,-6.40:6.01 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-6.41:6.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:1:-0.00,-0.30,-3.50:3.01 0/0:2:-0.00,-0.60,-6.90:6.02 0/0:3:-0.02,-0.91,-8.06:8.96 ./.:-1:0,0,0:-1 1/1:1:-2.09,-0.31,-0.01:2.97 0/0:2:-0.01,-0.60,-5.60:5.98 0/0:1:-0.00,-0.30,-3.16:3.01 0/0:6:-0.02,-1.82,-17.59:17.94 0/0:1:-0.00,-0.30,-2.50:3.00 0/0:4:-0.00,-1.21,-12.33:12.03 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:5:-0.01,-1.51,-14.72:14.97 0/0:1:-0.04,-0.31,-1.30:2.78 0/0:4:-0.00,-1.21,-12.62:12.03 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:2:-0.00,-0.60,-6.36:6.01 0/0:2:-0.00,-0.61,-5.66:6.00 0/0:3:-0.00,-0.90,-9.92:9.02 0/0:5:-0.00,-1.51,-15.77:15.03 0/0:4:-0.00,-1.21,-12.07:12.02 0/0:2:-0.04,-0.62,-3.80:5.78 0/0:5:-0.00,-1.51,-15.57:15.03 0/0:1:-0.00,-0.30,-2.60:3.00 0/0:4:-0.00,-1.21,-13.43:12.03 0/0:4:-0.02,-1.21,-10.72:11.91 0/1:4:-2.30,-1.21,-9.07:10.89 0/0:3:-0.01,-0.91,-7.90:8.96 0/0:5:-0.03,-1.52,-11.00:14.84 0/0:2:-0.01,-0.61,-4.86:5.93 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-8.76:9.01 0/0:2:-0.00,-0.60,-6.01:6.01 0/0:2:-0.00,-0.60,-5.86:6.01 ./.:-1:0,0,0:-1 0/1:4:-3.30,-1.21,-8.20:20.93 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-8.40:9.01 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.22:12.02 0/0:2:-0.00,-0.60,-6.56:6.02 0/0:1:-0.00,-0.30,-3.36:3.01
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20 98930 rs6116135 G A 144000.00 0 AB=0.48;AC=12;AF=0.13;AN=98;DB=1;DP=161;Dels=0.00;HRun=0;HaplotypeScore=10.36;MQ=58.04;MQ0=0;OQ=692.07;QD=18.21;SB=-749.76 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.70:3.01 0/0:4:-0.00,-1.21,-13.86:12.03 0/0:1:-0.00,-0.30,-3.80:3.01 0/0:2:-0.00,-0.60,-7.06:6.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:5:-0.01,-1.51,-16.35:15.02 0/0:1:-0.00,-0.30,-3.10:3.01 0/0:2:-0.00,-0.60,-5.94:6.01 0/0:2:-0.00,-0.60,-6.86:6.02 0/0:1:-0.00,-0.30,-3.27:3.01 0/0:1:-0.00,-0.30,-3.17:3.01 0/0:3:-0.00,-0.90,-9.41:9.02 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-13.76:12.03 0/0:6:-0.00,-1.81,-19.82:18.05 0/1:8:-15.56,-2.41,-11.90:94.91 0/0:1:-0.00,-0.30,-2.77:3.00 0/0:6:-0.03,-1.83,-17.05:17.95 0/0:5:-0.01,-1.51,-14.67:15.00 0/0:3:-0.00,-0.90,-9.43:9.02 0/0:4:-0.00,-1.21,-12.93:12.03 0/1:6:-17.71,-1.81,-2.97:11.63 0/0:3:-0.00,-0.90,-9.11:9.02 0/1:4:-3.76,-1.21,-9.01:25.53 0/0:2:-0.00,-0.60,-6.14:6.01 0/1:2:-3.97,-0.60,-3.17:25.66 0/0:5:-0.01,-1.51,-15.83:15.03 0/1:5:-14.76,-1.51,-2.87:13.63 0/0:2:-0.00,-0.60,-6.16:6.01 0/0:7:-0.03,-2.13,-19.09:20.96 0/0:6:-0.01,-1.81,-17.29:18.02 0/0:1:-0.00,-0.30,-3.17:3.01 0/1:2:-3.76,-0.60,-3.50:28.94 0/0:3:-0.00,-0.90,-9.66:9.02 0/0:3:-0.00,-0.90,-9.33:9.02 0/0:1:-0.00,-0.30,-3.40:3.01 0/0:4:-0.02,-1.22,-9.93:11.97 0/0:3:-0.00,-0.91,-9.09:9.02 0/1:3:-7.31,-0.91,-2.60:16.91 0/1:2:-3.37,-0.60,-3.07:24.66 0/0:7:-0.02,-2.12,-20.56:20.99 ./.:-1:0,0,0:-1 1/1:1:-3.67,-0.30,-0.00:3.01 0/0:2:-0.01,-0.61,-5.99:6.00 1/1:1:-3.66,-0.30,-0.00:3.01 0/0:3:-0.00,-0.90,-9.13:9.02 0/0:1:-0.00,-0.30,-3.07:3.01 0/0:2:-0.00,-0.60,-6.29:6.01 0/0:6:-0.01,-1.81,-19.29:18.04
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20 99505 . C A 0.09 FDRtranche25.00to35.00+ AB=0.60;AC=4;AF=0.05;AN=98;DB=0;DP=94;Dels=0.00;HRun=0;HaplotypeScore=10.68;MQ=58.13;MQ0=0;OQ=14.11;QD=2.02;SB=-400.98 GT:DP:GL:GQ 0/0:3:-0.01,-0.91,-8.66:8.98 0/0:3:-0.00,-0.90,-10.67:9.03 0/0:1:-0.00,-0.30,-3.10:3.01 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.76:3.01 0/1:2:-2.24,-0.60,-3.21:16.35 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:6:-0.01,-1.81,-18.66:18.02 0/0:3:-0.00,-0.90,-9.50:9.02 0/0:4:-0.00,-1.21,-12.22:12.02 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-5.50:6.00 0/0:1:-0.00,-0.30,-3.30:3.01 0/0:3:-0.00,-0.90,-9.56:9.02 0/1:4:-2.34,-1.21,-9.36:11.34 0/0:4:-0.05,-1.22,-10.06:11.73 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:1:-0.00,-0.30,-3.36:3.01 0/0:3:-0.00,-0.90,-9.10:9.02 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:6:-0.00,-1.81,-19.46:18.05 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:2:-0.00,-0.60,-6.10:6.01 0/0:1:-0.00,-0.30,-3.06:3.01 0/0:1:-0.00,-0.30,-3.26:3.01 0/0:2:-0.00,-0.60,-6.66:6.02 0/0:4:-0.01,-1.21,-11.82:12.00 0/0:1:-0.00,-0.30,-3.46:3.01 0/0:1:-0.00,-0.30,-3.40:3.01 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.56:6.02 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-12.86:12.03 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.66:6.02 ./.:-1:0,0,0:-1 1/1:1:-2.54,-0.30,-0.00:3.00 0/0:4:-0.00,-1.21,-12.47:12.03 0/0:1:-0.00,-0.30,-3.10:3.01 ./.:-1:0,0,0:-1 0/0:3:-0.00,-0.90,-9.82:9.02 ./.:-1:0,0,0:-1 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-6.46:6.02 0/0:1:-0.00,-0.30,-3.20:3.01 0/0:3:-0.00,-0.90,-9.56:9.02
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20 99638 . A G 0.37 FDRtranche25.00to35.00+ AB=0.33;AC=1;AF=0.01;AN=98;DB=0;DP=103;Dels=0.00;HRun=1;HaplotypeScore=9.77;MQ=58.54;MQ0=0;OQ=11.22;QD=3.74;SB=-488.90 GT:DP:GL:GQ 0/0:1:-0.00,-0.30,-3.76:3.01 0/1:3:-5.57,-0.91,-3.46:25.55 0/0:2:-0.00,-0.60,-7.63:6.02 0/0:1:-0.00,-0.30,-3.97:3.01 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:3:-0.00,-0.90,-11.19:9.03 0/0:1:-0.00,-0.30,-2.77:3.00 0/0:1:-0.00,-0.30,-3.97:3.01 0/0:3:-0.00,-0.90,-10.79:9.03 0/0:2:-0.00,-0.60,-6.82:6.02 0/0:2:-0.02,-0.62,-6.03:5.99 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:1:-0.00,-0.30,-3.87:3.01 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:2:-0.00,-0.60,-7.71:6.02 0/0:6:-0.01,-1.81,-21.49:18.05 0/0:3:-0.00,-0.90,-11.00:9.03 0/0:4:-0.00,-1.21,-14.45:12.04 0/0:2:-0.00,-0.60,-7.81:6.02 ./.:-1:0,0,0:-1 0/0:4:-0.00,-1.21,-15.26:12.04 0/0:3:-0.00,-0.90,-11.18:9.03 0/0:2:-0.00,-0.60,-7.42:6.02 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:2:-0.00,-0.60,-7.62:6.02 0/0:4:-0.00,-1.21,-14.56:12.04 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:4:-0.00,-1.21,-13.96:12.03 0/0:3:-0.00,-0.90,-11.49:9.03 0/0:2:-0.00,-0.60,-7.33:6.02 0/0:4:-0.00,-1.21,-14.83:12.04 ./.:-1:0,0,0:-1 0/0:1:-0.00,-0.30,-3.76:3.01 0/0:1:-0.00,-0.30,-3.97:3.01 0/0:1:-0.00,-0.30,-3.57:3.01 0/0:2:-0.00,-0.60,-7.52:6.02 0/0:1:-0.00,-0.30,-3.67:3.01 0/0:1:-0.00,-0.30,-3.77:3.01 0/0:2:-0.00,-0.60,-7.12:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.02,-0.62,-5.43:5.98 0/0:1:-0.00,-0.30,-3.47:3.01 0/0:4:-0.00,-1.21,-14.66:12.04 0/0:2:-0.00,-0.60,-7.52:6.02 ./.:-1:0,0,0:-1 0/0:2:-0.00,-0.60,-7.03:6.02 0/0:2:-0.02,-0.62,-5.82:5.97
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