gatk-3.8/public/packages/GenomeAnalysisTK.xml

45 lines
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XML

<?xml version="1.0" encoding="UTF-8"?>
<!--
~ Copyright (c) 2012, The Broad Institute
~
~ Permission is hereby granted, free of charge, to any person
~ obtaining a copy of this software and associated documentation
~ files (the "Software"), to deal in the Software without
~ restriction, including without limitation the rights to use,
~ copy, modify, merge, publish, distribute, sublicense, and/or sell
~ copies of the Software, and to permit persons to whom the
~ Software is furnished to do so, subject to the following
~ conditions:
~
~ The above copyright notice and this permission notice shall be
~ included in all copies or substantial portions of the Software.
~ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
~ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
~ OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
~ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
~ HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
~ WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
~ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
~ OTHER DEALINGS IN THE SOFTWARE.
-->
<!-- The full release of the GATK contains both public and protected tools (but nothing from private) -->
<package name="GenomeAnalysisTK">
<version file="StingText.properties" property="org.broadinstitute.sting.gatk.version" />
<executable name="GenomeAnalysisTK">
<main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
<resource-bundle file="StingText.properties" />
<modules>
<module file="GATKEngine.xml"/>
</modules>
</executable>
<modules>
<module file="AnalyzeCovariates.xml"/>
</modules>
<release>
<!-- TODO: determine the real directory where the protected GATK release should go -->
<executable directory="/local/gsa-engineering/test_releases/gatk" symlink="current" />
<archive directory="/local/gsa-engineering/test_releases/gatk" symlink="GenomeAnalysisTK-latest.tar.bz2" />
</release>
</package>