Ryan Poplin 8a93bb687b Critical bug fix for the case of duplicate map calls in ActiveRegionWalkers with exome interval lists. ... -- When consecutive intervals were within the bandpass filter size the ActiveRegion traversal engine would create duplicate active regions. -- Now when flushing the activity profile after we jump to a new interval we remove the extra states which are outside of the current interval. -- Added integration test which ensures that the output VCF contains no duplicate records. Was failing test before this commit.		2013-04-03 13:15:30 -04:00
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java	Critical bug fix for the case of duplicate map calls in ActiveRegionWalkers with exome interval lists.	2013-04-03 13:15:30 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00