66 lines
2.0 KiB
C++
66 lines
2.0 KiB
C++
/*Copyright (c) 2012 The Broad Institute
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*Permission is hereby granted, free of charge, to any person
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*obtaining a copy of this software and associated documentation
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*files (the "Software"), to deal in the Software without
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*restriction, including without limitation the rights to use,
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*copy, modify, merge, publish, distribute, sublicense, and/or sell
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*copies of the Software, and to permit persons to whom the
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*Software is furnished to do so, subject to the following
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*conditions:
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*The above copyright notice and this permission notice shall be
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*included in all copies or substantial portions of the Software.
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*THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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*EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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*OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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*NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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*HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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*WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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*FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR
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*THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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*/
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#include "headers.h"
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#include "utils.h"
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#include "LoadTimeInitializer.h"
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using namespace std;
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int main(int argc, char** argv)
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{
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if(argc < 2)
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{
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cerr << "Needs path to input file as argument\n";
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exit(0);
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}
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bool use_old_read_testcase = false;
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if(argc >= 3 && string(argv[2]) == "1")
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use_old_read_testcase = true;
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unsigned chunk_size = 10000;
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bool do_check = true;
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uint64_t mask = ~(0ull);
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for(int i=3;i<argc;++i)
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{
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if(strncmp(argv[i], "-chunk_size", 15) == 0)
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{
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++i;
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chunk_size = strtol(argv[i],0,10);
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}
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else
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if(strncmp(argv[i], "-mask", 15) == 0)
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{
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++i;
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mask = strtoll(argv[i],0,16);
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}
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else
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if(strncmp(argv[i], "-no-check", 15) == 0)
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do_check = false;
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}
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if(mask != (~0ull))
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initialize_function_pointers(mask);
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do_compute(argv[1], use_old_read_testcase, chunk_size, do_check);
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return 0;
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}
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