gatk3的最后一个经典版本3.8

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Mauricio Carneiro 5e2ffc74fc Automated interpretation for QualifyMissingIntervals * add a new column to do what I have been doing manually for every project, understand why we got no usable coverage in that interval * add unit tests -- this tool is now public, we need tests. * slightly better docs -- in an effort to produce better docs for this tool		2013-09-20 16:47:12 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Automated interpretation for QualifyMissingIntervals	2013-09-20 16:47:12 -04:00
public	adding a check for the UNAVAILABLE case of GenotypeType in CountVariants	2013-08-29 17:27:00 -04:00
settings	- update picard, sam, variants and tribble after fixing bug in BCF2Utils.makeDictionary as reported in ticket 52571227	2013-08-21 12:06:42 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	build.xml: make ant -p output only important build targets	2013-07-19 14:35:00 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

The Genome Analysis Toolkit