Eric Banks 5dfa863caa Fully stranded implementation of RR (plus bug fix for insertions and het compression). ... Now only filtered reads are unstranded. All consensus reads have strand, so that we emit 2 consensus reads in general now: one for each strand. This involved some refactoring of the sliding window which cleaned it up a lot. Also included is a bug fix: insertions downstream of a variant region weren't triggering a stop to the compression.		2013-07-25 14:48:53 -04:00
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gatk	Fully stranded implementation of RR (plus bug fix for insertions and het compression).	2013-07-25 14:48:53 -04:00
utils	A whole slew of improvements to the Haplotype Caller and related code.	2013-07-12 10:09:10 -04:00
package-info.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00