Eric Banks 5dfa863caa Fully stranded implementation of RR (plus bug fix for insertions and het compression). ... Now only filtered reads are unstranded. All consensus reads have strand, so that we emit 2 consensus reads in general now: one for each strand. This involved some refactoring of the sliding window which cleaned it up a lot. Also included is a bug fix: insertions downstream of a variant region weren't triggering a stop to the compression.		2013-07-25 14:48:53 -04:00
..
java	Fully stranded implementation of RR (plus bug fix for insertions and het compression).	2013-07-25 14:48:53 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00