gatk3的最后一个经典版本3.8

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Eric Banks 5dfa863caa Fully stranded implementation of RR (plus bug fix for insertions and het compression). Now only filtered reads are unstranded. All consensus reads have strand, so that we emit 2 consensus reads in general now: one for each strand. This involved some refactoring of the sliding window which cleaned it up a lot. Also included is a bug fix: insertions downstream of a variant region weren't triggering a stop to the compression.		2013-07-25 14:48:53 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Fully stranded implementation of RR (plus bug fix for insertions and het compression).	2013-07-25 14:48:53 -04:00
public	Fixing ReadBackedPileup to represent mapping qualities as ints, not (signed) bytes.	2013-07-23 23:47:15 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	build.xml: make ant -p output only important build targets	2013-07-19 14:35:00 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

The Genome Analysis Toolkit