gatk3的最后一个经典版本3.8

jmaguire 5dca560c3c A bunch of refactoring, and more on the way. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@122 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-20 21:31:07 +00:00
core/java/src/org/broadinstitute/sting	Crushed subtle and potentially insidous bug in seeking within the fasta; a beer for anyone who can tell me the situation where this might arise...	2009-03-20 00:07:06 +00:00
doc	Describe how GATK finds walkers. Change the example to avoid copying the class file into the walkers directory.	2009-03-19 22:41:12 +00:00
playground	A bunch of refactoring, and more on the way.	2009-03-20 21:31:07 +00:00
settings	Added subversion rev 180 of the sam library.	2009-03-20 20:17:51 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Move the basic gatk framework into the core subtree.	2009-03-18 23:39:00 +00:00
ivy.xml	Added dependences on two libraries: the Colt package, which is a collection of high performance computing libraries from CERN; and Log4j, which will be our new logging platform.	2009-03-19 16:16:31 +00:00