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gatk-3.8/scala/qscript/oneoffs/kshakir/linearindexbintests/test_vcfs

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/seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta
/humgen/gsa-firehose2/pipeline/projects/Barcoded_1000G_WEx_Plate_1/v5/IndelCalls/IntermediateFiles/Barcoded_1000G_WEx_HG01359/HG01359.cleaned.indels.vcf
/humgen/gsa-firehose2/pipeline/projects/Barcoded_1000G_WEx_Plate_1/v5/IndelCalls/IntermediateFiles/Barcoded_1000G_WEx_NA19670/NA19670.cleaned.indels.vcf
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