7 lines
327 B
Bash
7 lines
327 B
Bash
#!/bin/sh
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java -Djava.io.tmpdir=/broad/shptmp/hanna -jar ~/src/Sting/dist/Queue.jar \
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--script PrintReadsAcrossManySamples.q \
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-gatk ~/src/Sting/dist/GenomeAnalysisTK.jar \
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-R /humgen/1kg/reference/human_g1k_v37.fasta \
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-I ~/tests/1600samples/1kg_t2d.list --max_bams 2000 --step_size 10 -bsub -jobQueue week $1
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