gatk-3.8/scala/qscript/oneoffs
chartl 912c6cdbfa Moving this script out of playground while I figure out what's going on.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5848 348d0f76-0448-11de-a6fe-93d51630548a
2011-05-23 17:48:44 +00:00
..
carneiro Added VQSR to the downsampling script and changed memory limits for the clean script. 2011-05-18 20:07:42 +00:00
chartl Moving this script out of playground while I figure out what's going on. 2011-05-23 17:48:44 +00:00
delangel Removed unused importants, but some of these scripts are now out of date (they have been for a long time) so they don't compile anyway 2011-05-22 18:43:48 +00:00
depristo Computes how well a genotype chip covers a reference panel 2011-05-14 15:07:28 +00:00
fromer Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
hanna Incorporating Khalid's feedback. 2011-04-08 16:22:49 +00:00
kshakir Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
rpoplin Removed unused importants, but some of these scripts are now out of date (they have been for a long time) so they don't compile anyway 2011-05-22 18:43:48 +00:00
QTools.q Generalized association is now working. Output is in a horrific format. Implementation of T-testing. Improvements are to look for classes dynamically (a la VariantEval/VariantAnnotator), beautify output, and do optimizations where they exist. 2011-03-01 01:23:37 +00:00