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gatk-3.8/java/test/org/broadinstitute/sting/gatk/datasources/reads
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hanna 03452c15c0 Cleanup GATKBAMIndex unit test to allow a more efficient access pattern for 
FindLargeShards.  Runtime of FindLargeShards on papuan dataset is now 75min.
GATK proper should benefit as well, although the benefits might be so small
as to not be measurable.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5798 348d0f76-0448-11de-a6fe-93d51630548a
 		2011-05-12 21:50:33 +00:00
..
DownsamplerBenchmark.java Factor out all testing dependencies into a separate test configuration and 2011-05-05 22:42:11 +00:00
FilePointerUnitTest.java A fix for Marian Thieme's NPE in the new sharding system. 2011-04-21 19:47:14 +00:00
GATKBAMIndexUnitTest.java Cleanup GATKBAMIndex unit test to allow a more efficient access pattern for 2011-05-12 21:50:33 +00:00
GATKWalkerBenchmark.java Factor out all testing dependencies into a separate test configuration and 2011-05-05 22:42:11 +00:00
MockLocusShard.java A few minor modifications masquerading as significant changes according to 2011-02-03 17:59:19 +00:00
PicardBaselineBenchmark.java Factor out all testing dependencies into a separate test configuration and 2011-05-05 22:42:11 +00:00
ReadProcessingBenchmark.java Factor out all testing dependencies into a separate test configuration and 2011-05-05 22:42:11 +00:00
SAMBAMDataSourceUnitTest.java A few minor modifications masquerading as significant changes according to 2011-02-03 17:59:19 +00:00
TheoreticalMinimaBenchmark.java Factor out all testing dependencies into a separate test configuration and 2011-05-05 22:42:11 +00:00