Mauricio Carneiro 5dc2143142 Removed support for walkers ending with "Walker" from the engine. ... If your walker has "Walker" in the name, you will have to use "Walker" on the -T to access it.		2012-07-20 17:27:11 -04:00
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R	GATK Error messages now point to the new website instead of GetSatisfaction.	2012-07-20 17:27:11 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Removed support for walkers ending with "Walker" from the engine.	2012-07-20 17:27:11 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Removed the "Walker" suffix from all walkers that had it.	2012-07-20 17:27:11 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	GATK Error messages now point to the new website instead of GetSatisfaction.	2012-07-20 17:27:11 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00