Eric Banks c66ef17cd0 Add a separate max alt alleles argument for indels that defaults to 2 instead of 3. PLEASE TAKE NOTE.		2012-10-04 13:52:14 -04:00
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walkers	Add a separate max alt alleles argument for indels that defaults to 2 instead of 3. PLEASE TAKE NOTE.	2012-10-04 13:52:14 -04:00
DummyProtectedClass.java	Total rewrite of the isGATKLite() functionality with help of Khalid/David. PluginManager was not working for us.	2012-07-17 15:11:03 -04:00