kiran 5d60efc498 Factored out some simple stats accumulation. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@733 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-17 03:37:57 +00:00
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gatk	Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along	2009-05-15 21:02:12 +00:00
playground	LOD checks for normal and brute force versions	2009-05-17 02:56:03 +00:00
secondarybase	Factored out some simple stats accumulation.	2009-05-17 03:37:57 +00:00
utils	Revised ROD system. Split the system in Basic type and interface. Enabled more control over rod accessing, including an initialize() function to fetch headers and other options from the file. Added general tabular rod, which has a named columns and supports a map<String,String> interface. Comes with shiny new Junit system for RODs. Also, added simple python script for accessing picard data.	2009-05-14 21:06:28 +00:00