hanna 5d4bbf41fb Behave intelligently in the deepest levels of GATK record filtration when ... we find a read flagged as 'mapped' in the unmapped region at the end of the file. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5365 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-03 04:52:55 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Behave intelligently in the deepest levels of GATK record filtration when	2011-03-03 04:52:55 +00:00
test	More descriptive error when VerifyingSamIterator hits an inconsistent alignment. Also updated	2011-03-03 03:55:24 +00:00