gatk3的最后一个经典版本3.8

Mark DePristo 5d2ee32936 Documentation and validation for NA12878 KB tools ... -- MongoVariantContexts and MongoGenotype have a validate() function that ensures that the information is consistent, in anticipation of potential problems with the data coming in from reviews via IGV -- Divide the world into production, development, and test DB, via the NA12878DBArgumentCollection		2012-11-21 17:24:59 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Lots more GGA fixes for the HC now that I understand what's going on internally. Integration tests pass except for the GGA test which I believe now produces better results.	2012-11-20 16:13:29 -05:00
public	Initial read mapping tests	2012-11-21 17:16:46 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Merging CMI-0.5.0 and GATK-2.2 together.	2012-11-14 10:42:03 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00