gatk3的最后一个经典版本3.8

Ryan Poplin 5c98424783 Add the reference haplotype to the assembly graph. The philosophy of the assembly is now to traverse paths alongside the reference instead of finding all possible paths.		2012-03-21 17:42:54 -04:00
public	New debug option to output the assembly graph in dot format. Merge nodes in assembly graph when possible.	2012-03-21 15:48:55 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00