gatk3的最后一个经典版本3.8

Mark DePristo 5bcb5c7433 Preliminary refactoring of ART ... -- Refactored ART into clearer, simpler procedures. Attempted to merge shared code into utility classes. -- Added some docs -- Created a new, testable ActivityProfile that represents as a class the probability of a base being active or inactive -- Separated band-pass filtering from creation of active regions. Now you can band pass filter a profile to make another profile, and then that is explicitly converted to active regions -- Misc. utility functions in ActiveRegionWalker such as hasPresetActiveRegions() -- Many TODOs in ActivityProfile.		2012-03-14 17:26:37 -04:00
public	Preliminary refactoring of ART	2012-03-14 17:26:37 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00