gatk-3.8/public/java
Mauricio Carneiro 5bba44d693 Added hardClipByReferenceCoordinates UnitTest for the ReadClipper
* fixed edge case when requested to hard clip beginning of a read that had hanging soft clipped bases on the left tail.
* fixed edge case when requested to hard clip end of a read that had hanging soft clipped bases on the right tail.
* fixed AlignmentStart of a clipped read that results in only hard clips and soft clips

note: added tests to all these beautiful cases...
2011-12-16 18:01:33 -05:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Added hardClipByReferenceCoordinates UnitTest for the ReadClipper 2011-12-16 18:01:33 -05:00
test Added hardClipByReferenceCoordinates UnitTest for the ReadClipper 2011-12-16 18:01:33 -05:00