gatk3的最后一个经典版本3.8

Mauricio Carneiro 5bba44d693 Added hardClipByReferenceCoordinates UnitTest for the ReadClipper ... * fixed edge case when requested to hard clip beginning of a read that had hanging soft clipped bases on the left tail. * fixed edge case when requested to hard clip end of a read that had hanging soft clipped bases on the right tail. * fixed AlignmentStart of a clipped read that results in only hard clips and soft clips note: added tests to all these beautiful cases...		2011-12-16 18:01:33 -05:00
public	Added hardClipByReferenceCoordinates UnitTest for the ReadClipper	2011-12-16 18:01:33 -05:00
settings	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Extensive unit test for GenotypeContextUnitTest	2011-11-20 18:28:01 -05:00
ivy.xml	Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3	2011-11-17 14:46:12 -05:00