Khalid Shakir fd59e7d5f6 Better error message when generic types are erased from scala collections.		2012-10-22 16:27:31 -04:00
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ClassFieldCache.scala	Moved the class field caching from QScript to a ClassFieldCache utility.	2012-10-16 18:49:31 -04:00
CollectionUtils.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
EmailMessage.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
EmailSettings.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
Logging.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PrimitiveOptionConversions.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
QJobReport.scala	Complete GSA-497: Let Queue write out runInfo on the fly, after each job group finishes running	2012-08-21 14:44:18 -04:00
QJobsReporter.scala	Complete GSA-497: Let Queue write out runInfo on the fly, after each job group finishes running	2012-08-21 14:44:18 -04:00
QScriptUtils.scala	First implementation of a generic 'bundled' Data Processing Pipeline for germline and cancer.	2012-10-15 13:49:06 -04:00
ReflectionUtils.scala	Added explicit @ClassType annotations to @Argument for Option[Int] or Option[Double] since scala seems to change the reflected type to Option[Object] on some systems.	2012-10-19 13:20:29 -04:00
RemoteFile.scala	Added more logging to push/pull of RemoteFiles.	2012-10-17 09:52:17 -04:00
Retry.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
RetryException.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ScalaCompoundArgumentTypeDescriptor.scala	Better error message when generic types are erased from scala collections.	2012-10-22 16:27:31 -04:00
ShellUtils.scala	Queue now properly escapes all shell arguments in generated shell scripts	2011-12-01 18:13:44 -05:00
StringFileConversions.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
SystemUtils.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
TextFormatUtils.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
VCF_BAM_utilities.scala	Implemented getSamplesFromVCF.	2012-05-03 21:57:57 -04:00