gatk3的最后一个经典版本3.8

Guillermo del Angel 5b6d279a2e Two bug fixes: ... a) Modified the way clipped bases are dealt with in ReadPosRankSumTest when annotating indels. Cigar string cannot be trusted because BWA can clip good high quality bases and some sites get incorrect ReadPos annotations if BWA systematically clips at an indel breakpoint. b) PL header needs to specify "." as length. Otherwise we fail VCF validation if multiallelic sites are present.		2011-06-29 10:21:27 -04:00
public	Two bug fixes:	2011-06-29 10:21:27 -04:00
settings	Updated the tribble jar -- this should fix most of the integration test	2011-06-29 01:11:03 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Bug fixes for build.xml related to the public/private restructuring.	2011-06-28 12:55:18 -04:00
ivy.xml	A prototype script and library dependencies to extract a BAM list from a	2011-06-22 22:53:45 +00:00