Mauricio Carneiro d561914d4f Revert "First implementation of GATKReportGatherer" ... premature push from my part. Roger is still working on the new format and we need to update the other tools to operate correctly with the new GATKReport. This reverts commit aea0de314220810c2666055dc75f04f9010436ad.		2012-02-08 23:28:55 -05:00
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R	queueJobReport now compresses PDF when running R 2.13+.	2012-01-10 17:32:30 -05:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	Revert "First implementation of GATKReportGatherer"	2012-02-08 23:28:55 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Minor manual merge update for List class to Seq interface usage.	2012-02-08 02:24:54 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00