Valentin Ruano-Rubio 5afcc8e05f Change in the command line interface of ValidateVariants. ... Following reviewers comments the command line interface has been simplified. All extra strict validations are performed by default (as before) and the user has to indicate which one he/she does not want to use with --validationTypeToExclude. Before he/she was able to indicate the only ones to apply with --validationType but that has been scrapped out. Stories: - https://www.pivotaltracker.com/story/show/68725164 Changes: - Removed validateType argument. - Improved documentation. - Added some warnning log message on suspicious argument combinations. Tests: - ValidateVariantsIntegrationTest#*		2014-04-07 16:27:11 -04:00
..
main/java/org/broadinstitute/sting	IndelRealigner throws a user error when it encounters reads with I operators greater than the number of read bases.	2014-04-03 18:16:24 -04:00
test/java/org/broadinstitute/sting	Change in the command line interface of ValidateVariants.	2014-04-07 16:27:11 -04:00