gatk-3.8/protected
Valentin Ruano-Rubio 5afcc8e05f Change in the command line interface of ValidateVariants.
Following reviewers comments the command line interface has been simplified.
All extra strict validations are performed by default (as before) and the
user has to indicate which one he/she does not want to use with --validationTypeToExclude.

Before he/she was able to indicate the only ones to apply with --validationType but that has been scrapped out.

Stories:

    - https://www.pivotaltracker.com/story/show/68725164

Changes:

    - Removed validateType argument.
    - Improved documentation.
    - Added some warnning log message on suspicious argument combinations.

Tests:

    - ValidateVariantsIntegrationTest#*
2014-04-07 16:27:11 -04:00
..
gatk-protected Change in the command line interface of ValidateVariants. 2014-04-07 16:27:11 -04:00
pom.xml Update pom versions to mark the start of GATK 3.2 development 2014-03-18 01:18:59 -04:00