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gatk3的最后一个经典版本3.8
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Valentin Ruano-Rubio 5afcc8e05f Change in the command line interface of ValidateVariants. 
Following reviewers comments the command line interface has been simplified.
All extra strict validations are performed by default (as before) and the
user has to indicate which one he/she does not want to use with --validationTypeToExclude.

Before he/she was able to indicate the only ones to apply with --validationType but that has been scrapped out.

Stories:

    - https://www.pivotaltracker.com/story/show/68725164

Changes:

    - Removed validateType argument.
    - Improved documentation.
    - Added some warnning log message on suspicious argument combinations.

Tests:

    - ValidateVariantsIntegrationTest#*
 		2014-04-07 16:27:11 -04:00
licensing deleted old license files 2013-07-02 16:36:47 -04:00
protected Change in the command line interface of ValidateVariants. 2014-04-07 16:27:11 -04:00
public Change in the command line interface of ValidateVariants. 2014-04-07 16:27:11 -04:00
settings/helpTemplates Replaced local drmaa and Jama artifacts with versions from maven central. 2014-02-22 01:21:35 +08:00
.gitignore Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale) 2014-04-01 16:14:52 -04:00
README.md Update README file for the 2.6 release 2013-06-20 13:08:29 -04:00
ant-bridge.sh Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 2014-03-10 21:24:03 -04:00
intellij_example.tar.bz2 Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!) 2012-09-27 11:04:56 -04:00
pom.xml Update pom versions to mark the start of GATK 3.2 development 2014-03-18 01:18:59 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/