gatk3的最后一个经典版本3.8

depristo 5af4bb628b Intermediate checking before code reorganization. Full blown support for empirical transition probs in SSG for all platforms. Support for defaultPlatform arg in SSG. Renaming classes for final cleanup ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1479 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-30 17:34:43 +00:00
R	Updated python files	2009-07-07 14:15:39 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	moved to wiki	2009-07-22 16:35:23 +00:00
java	Intermediate checking before code reorganization. Full blown support for empirical transition probs in SSG for all platforms. Support for defaultPlatform arg in SSG. Renaming classes for final cleanup	2009-08-30 17:34:43 +00:00
packages	adding the package description for the VCF validator	2009-08-20 04:46:27 +00:00
perl	Now you can specify '-' instead of input file name, and the script will read from stdin	2009-08-14 20:30:56 +00:00
python	Added command line options to make the barcode analysis script executable by end users.	2009-08-24 21:15:09 +00:00
scala/src	support for scala walkers	2009-08-28 00:15:01 +00:00
settings	Switched to Reflections (http://code.google.com/p/reflections/) project for	2009-07-21 18:32:22 +00:00
shell	Version 0.2.1 (released) of the TableRecalibrator	2009-06-25 22:50:55 +00:00
testdata	2009_02 release is no longer with us. Update the bam list.	2009-08-11 12:49:23 +00:00
build.xml	Nicer building of scala programs	2009-08-29 16:41:56 +00:00
ivy.xml	Switched to Reflections (http://code.google.com/p/reflections/) project for	2009-07-21 18:32:22 +00:00