Mauricio Carneiro 16caca0822 BLASR BAMs and new BWA parameters ... *Added the functions to turn a BLASR generated BAM file into a usable BAM file. *Modified the bwa parameters according to test results from NA12878 pb2k dataset.		2011-08-24 17:04:07 -04:00
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examples	Fixed example unified genotyper pipeline to wrap filter expressions with quotes and use rod binding name "variant" instead of "vcf".	2011-08-03 02:21:01 -04:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	Fixed list dependency	2011-08-24 11:12:46 -04:00
GATKResourcesBundle.scala	Updating resource bundle generation qscript for changeover to git	2011-08-08 12:35:39 -04:00
MethodsDevelopmentCallingPipeline.scala	updating exome specific parameters in MDCP	2011-08-21 10:25:36 -04:00
PacbioProcessingPipeline.scala	BLASR BAMs and new BWA parameters	2011-08-24 17:04:07 -04:00
StandardVariantEvaluation.scala	new home for the core qscripts	2011-06-30 11:32:06 -04:00