gatk3的最后一个经典版本3.8

Mark DePristo 5a54eac57d Bugfix for AssessNA12878 ... -- Add GT field to bad sites VCF by default, as we write out GT even if the input VCF is sites only		2013-06-05 15:34:23 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Bugfix for HC can fail to assemble the correct reference sequence in some cases	2013-06-03 16:16:39 -04:00
public	Bugfix for HaplotypeCaller error: Only one of refStart or refStop must be < 0, not both	2013-06-04 10:33:46 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00