gatk3的最后一个经典版本3.8

Mark DePristo 5a5422e4f8 Refactor PerSampleReadStates into a separate class ... -- No longer update the total counts in each per-sample state manager, but instead return delta counts that are updated by the overall ReadStateManager -- One step on the way to improving the underlying representation of the data in PerSampleReadStateManager -- Make LocusIteratorByState final		2013-01-14 16:30:16 -05:00
licensing	Cleaning CRLF terminations in the licenses	2013-01-10 17:06:29 -05:00
protected/java	Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable	2013-01-14 13:27:34 -05:00
public	Refactor PerSampleReadStates into a separate class	2013-01-14 16:30:16 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00