corin d2efea6003 This is a draft of the improved and prettified pipeline. It may not yet compile, but Kiran is taking over adding a few more things as I finish up other tasks. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5248 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-15 19:35:00 +00:00
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core	small updates to the variant eval part of the pipeline, some updates to the pacbio specific pipeline.	2011-02-15 16:19:07 +00:00
examples	Moved the maximum number of intervals check from FCP to the Queue core so that scatter gather will no longer blow up if you specify a scatter count that is too high.	2011-01-28 23:33:58 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	small updates to the variant eval part of the pipeline, some updates to the pacbio specific pipeline.	2011-02-15 16:19:07 +00:00
playground	This is a draft of the improved and prettified pipeline. It may not yet compile, but Kiran is taking over adding a few more things as I finish up other tasks.	2011-02-15 19:35:00 +00:00