hanna b43d4d909e Fix CleanedReadInjectorTest to work with new CleanedReadInjector. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1142 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-01 15:48:06 +00:00
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gatk	When you get the reference string for a read that is mapped partially off the end of a contig, the string is masked with X's for base positions without corresponding reference positions.	2009-06-29 20:51:55 +00:00
playground/gatk/walkers/indels	Fix CleanedReadInjectorTest to work with new CleanedReadInjector.	2009-07-01 15:48:06 +00:00
utils	Fixed genome loc to be immutable, the only way to now change it's values is through the GenomeLocParser.	2009-06-30 19:17:24 +00:00
BaseTest.java	Added some code to change the instrumentation for tests.	2009-05-20 05:15:27 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00