gatk-3.8/public/scala/src
Mauricio Carneiro efbfdb64fe Qscript to Downsample and analyze an exome BAM
this script downsamples an exome BAM several times and makes a coverage distribution
analysis (of bases that pass filters) as well as haplotype caller calls with a NA12878
Knowledge Base assessment with comparison against multi-sample calling
with the UG.

This script was used for the "downsampling the exome" presentation
2013-10-10 14:37:33 -04:00
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org/broadinstitute/sting/queue Qscript to Downsample and analyze an exome BAM 2013-10-10 14:37:33 -04:00