ebanks 5a20bf0e64 3 changes to UG which break integration tests: ... 1. emit AA,AB,BB likelihoods in the FORMAT field for Mark 2. remove constraint that genotype alleles (in the GT field) need to be lexigraphically sorted. 3. Add bam file(s) used by genotyper to header for Kiran git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2963 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-09 17:16:47 +00:00
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alignment	oops - didn't mean to check this in	2010-03-02 20:28:22 +00:00
gatk	3 changes to UG which break integration tests:	2010-03-09 17:16:47 +00:00
oneoffprojects/walkers	Add integration test for quartiles overflowing on interval reduce	2010-03-08 16:18:45 +00:00
playground/gatk/walkers	Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system.	2010-03-09 03:41:07 +00:00
utils	Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system.	2010-03-09 03:41:07 +00:00
BaseTest.java	added root GATKData variable	2010-02-12 15:25:34 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	another test-with-multiple outputs fix	2010-03-04 22:46:15 +00:00