ebanks 5a20bf0e64 3 changes to UG which break integration tests: ... 1. emit AA,AB,BB likelihoods in the FORMAT field for Mark 2. remove constraint that genotype alleles (in the GT field) need to be lexigraphically sorted. 3. Add bam file(s) used by genotyper to header for Kiran git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2963 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-09 17:16:47 +00:00
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sting	3 changes to UG which break integration tests:	2010-03-09 17:16:47 +00:00