Eric Banks 5a1564d1f2 Merge pull request #456 from broadinstitute/eb_unify_hc_combination_steps ... Created a new walker to do the full combination of N gVCFs from the HC single-sample ref calc pipeline.		2013-12-31 18:57:27 -08:00
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commandline	Add ability to specify min/max required/recommended values for numeric arguments in the @Argument annotation	2013-12-18 18:09:08 -05:00
gatk	Fixed bug in the filtering of lifted over variants where a deletion at the end of a contig could cause it to error out.	2013-12-11 14:07:18 -05:00
jna	Fix pipeline tests that were not respecting the pipeline test dry run setting	2013-06-28 15:27:17 -04:00
utils	Created a new walker to do the full combination of N gVCFs from the HC single-sample ref calc pipeline.	2013-12-31 12:07:56 -05:00
BaseTest.java	Adding Graph-based likelihood ratio calculation to HC	2013-12-02 19:37:19 -05:00
ExampleToCopyUnitTest.java	Add a class-based DataProvider	2013-12-03 13:31:01 -05:00
MD5DB.java	Enable convenient display of diff engine output in Bamboo, plus misc. minor test-related improvements	2013-05-10 19:00:33 -04:00
MD5Mismatch.java	Enable convenient display of diff engine output in Bamboo, plus misc. minor test-related improvements	2013-05-10 19:00:33 -04:00
StingTextReporter.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
TestNGTestTransformer.java	Adding Graph-based likelihood ratio calculation to HC	2013-12-02 19:37:19 -05:00
WalkerTest.java	Throw a GVCFIndexException when the user doesn't specify the optimal indexing strategy	2013-12-03 23:12:14 -05:00