..
VectorPairHMM
Do not use logger, write to stderr, could not get the correct logger dependency in pom.xml
2015-01-06 10:32:11 -05:00
c
After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.
2014-05-19 17:36:41 -04:00
chainFiles
The contig is named MT not M in b36. Delivers PT68890442.
2014-04-08 10:03:47 -04:00
doc
Updated readme in public/doc to just point to the website
2015-03-12 11:52:48 -04:00
external-example
Added introductory CRAM support.
2015-01-26 14:47:39 -03:00
gatk-engine
Automatically choose indexing strategy by file extension
2015-03-27 11:10:35 -04:00
gatk-queue
Faster builds, with updates to documentation generation.
2014-11-05 00:32:23 +08:00
gatk-queue-extensions-generator
Added optional element "includeUnmapped" to the PartitionBy annotation
2015-01-31 15:47:57 -05:00
gatk-queue-extensions-public
Added optional element "includeUnmapped" to the PartitionBy annotation
2015-01-31 15:47:57 -05:00
gatk-root
Upgrade SLF4J to allow new convient logging syntaxes
2015-03-02 17:01:10 -05:00
gatk-tools-public
Annotation changes for M2:
2015-03-27 18:25:23 -04:00
gatk-utils
Added the RGQ format annotation to monomorphic sites in the VCF output of GenotypeGVCFs.
2015-03-13 10:27:20 -04:00
gsalib
Fixes the test that was failing due to gsalib build failure
2015-03-17 04:26:03 -04:00
java /config
Refactored maven directories and java packages replacing "sting" with "gatk".
2014-05-19 17:36:39 -04:00
package-tests
Split all imports of tools|engine from utils, and all tools from engine.
2014-10-24 20:59:46 +08:00
perl
Fixing the liftover script to not require strict VCF header validation.
2013-11-07 09:02:17 -05:00
repo
Bumping HTSJDK version to pickup a bug fix for CRAM.
2015-01-26 14:47:39 -03:00
src /main
Added faster built executable, non-packaged jars.
2014-11-05 00:30:46 +08:00
pom.xml
Update pom versions to mark the start of GATK 3.4 development
2014-10-23 22:31:44 -04:00
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