gatk-3.8/protected/gatk-tools-protected
Laura Gauthier 5a10758e2e Annotation changes for M2:
Build a ReferenceContext in ActiveRegionWalkers to pass in to annotation engine so we can call the TandemRepeatAnnotator from M2
Make TandemRepeatAnnotator default annotation for M2.
Setup (but don't use yet) HC-style contamination downsampling.
New HC integration test with TandemRepeatAnnotator
2015-03-27 18:25:23 -04:00
..
src Annotation changes for M2: 2015-03-27 18:25:23 -04:00
pom.xml Faster builds, with updates to documentation generation. 2014-11-05 00:32:23 +08:00